BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0562.0001.p
         (98 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ppsE_2 [Q] COG3319 Thioesterase domains of type I polyketide ...   104   4e-23
BS_ppsA_1 [Q] COG1020 Non-ribosomal peptide synthetase modules a...   104   4e-23
BS_ppsA_2 [Q] COG1020 Non-ribosomal peptide synthetase modules a...   104   4e-23
BS_pps [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phospha...   104   4e-23
lin0432 [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosph...    79   2e-15

>BS_ppsE_2 [Q] COG3319 Thioesterase domains of type I polyketide synthases or
           non-ribosomal peptide synthetases
          Length = 211

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 0/89 (0%), Positives = 0/89 (0%)

Query: 1   LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQFHNDPAIVSDLIK 60
                                                                       
Sbjct: 383                                                              442

Query: 61  HSQALIGQLKQNIQTKSGPALFDFIREDL 89
                                        
Sbjct: 443                               471


>BS_ppsA_1 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
           proteins
          Length = 792

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 9/89 (10%), Positives = 21/89 (23%)

Query: 1   LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQFHNDPAIVSDLIK 60
           +N +   D+L+ D      E      S         T  +                D  +
Sbjct: 383 MNRIEPGDVLVTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATE 442

Query: 61  HSQALIGQLKQNIQTKSGPALFDFIREDL 89
             +          +  +G    + +   +
Sbjct: 443 RMKDGENVTVSCAEGDTGYVYAELLEFSV 471


>BS_ppsA_2 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
           proteins
          Length = 792

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 9/89 (10%), Positives = 21/89 (23%)

Query: 1   LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQFHNDPAIVSDLIK 60
           +N +   D+L+ D      E      S         T  +                D  +
Sbjct: 383 MNRIEPGDVLVTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATE 442

Query: 61  HSQALIGQLKQNIQTKSGPALFDFIREDL 89
             +          +  +G    + +   +
Sbjct: 443 RMKDGENVTVSCAEGDTGYVYAELLEFSV 471


>BS_pps [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate
           dikinase
          Length = 866

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 1   LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQFHNDPAIVSDLIK 60
           L  +G+ D L+KDALMT+I+R DF+KS+P+D+ AP+  R N D  AQ  NDP IVSDLI+
Sbjct: 383 LKGMGQHDQLLKDALMTIIKRRDFIKSIPNDKTAPNPSRGNADMPAQVENDPTIVSDLIE 442

Query: 61  HSQALIGQLKQNIQTKSGPALFDFIREDL 89
            SQ  I +LKQNIQTKSG  LF FI ED+
Sbjct: 443 SSQTSIEELKQNIQTKSGSDLFRFILEDI 471


>lin0432 [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate
           dikinase
          Length = 432

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 0/96 (0%), Positives = 0/96 (0%), Gaps = 15/96 (15%)

Query: 1   LNTLGRSDLLIKDALMTLIERGDF-----VKSVPDDQPAPDT--IRSNPDPLAQFHNDPA 53
           L     +  +   ++        +     ++    ++   +                   
Sbjct: 383 LAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRK--------         434

Query: 54  IVSDLIKHSQALIGQLKQNIQTKSGPALFDFIREDL 89
                                               
Sbjct: 435                                      470


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.139    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,856,835
Number of extensions: 257715
Number of successful extensions: 437
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 6
Length of query: 98
Length of database: 38,378,431
Length adjustment: 67
Effective length of query: 31
Effective length of database: 30,651,053
Effective search space: 950182643
Effective search space used: 950182643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)