BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0038.p (506 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic ... 427 e-119 BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic... 347 3e-95 BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic... 301 1e-81 BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic ... 82 1e-15 YPO3472 [G] COG1653 ABC-type sugar transport system, periplasmic... 79 2e-14 >BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 512 Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust. Identities = 220/488 (45%), Positives = 316/488 (64%), Gaps = 21/488 (4%) Query: 28 CSSEDAGHSSPAG-------------EAP-SISILAPLHFPQTPARDIVTEIDKLTGVRL 73 CSS + G S+PA ++P + + L+ Q P ++ EI++LT L Sbjct: 23 CSSSNEGTSAPAEEGEGNTEEEAFDPDSPLDLDWMVILYHQQPPKDTVIKEIEELTNTNL 82 Query: 74 EITWVPEGVYTDKMNTAMATGSLGKVTFVKVTDYNLVKNAIRSGAFWEIGPYLKDFPNLK 133 ++ WVP+ V D++N A+A+G+L KV ++ + V NA RSG FWEIGPYL +FPNL Sbjct: 83 DLIWVPDAVKEDRVNAALASGNLPKVITLQDFRTSSVLNAFRSGQFWEIGPYLDEFPNLS 142 Query: 134 QLDPAILDQTAVDGKFYGLYTERPSSRQGIIIRKDWLDRLHLNKPQTLEELYHVLRQFTY 193 +++ IL+ +VDGK YG+Y ERP SRQG++IR+DWL+ L L P LEELY V R FTY Sbjct: 143 EMNETILENVSVDGKIYGIYRERPLSRQGVVIRQDWLENLGLEMPTNLEELYEVARAFTY 202 Query: 194 NDPDGNGKADTLGLVDRNDLVYGVFKTLSSYFGTPNNWK-RVKGQFIPEFETPEYMDTMN 252 +DP+G+G DT+G DRNDL++G FKTL+SY GTPN W +G+ +PEF T EY++TMN Sbjct: 203 DDPNGSGADDTVGFTDRNDLIFGAFKTLASYHGTPNEWGFDDEGKLMPEFMTDEYVETMN 262 Query: 253 FMKRLYHEKIINQDFALTSKEVQRDKFIRGSAGVFIGSMTDVQRLSIEAQAINPAAELTL 312 +MK LY E +IN +F +TSKE Q++ F+ G AG+++G+M D + L +A+ INP E+ + Sbjct: 263 YMKSLYDEGLINTEFPVTSKEQQQELFMTGRAGIYVGNMVDARNLRDKAKDINPEMEVAI 322 Query: 313 INRIKGPEGY-KVWSIPNYNGLYLFSKKAIATEAELKQVLGFFDRTMDKDVANLMKYGFE 371 NRI GP+G +VW+ +NG++ K ++ TEAELK++L FFDR ++DV NLM YG E Sbjct: 323 TNRIAGPDGEDRVWAQGGHNGIFAIPKSSVETEAELKRILAFFDRIAEEDVYNLMAYGIE 382 Query: 372 GRHYKLEDGKVI-LPEETSQLRVNEVSPLYSLMIADIGNRNIMEIAQKEQLTALADQLSE 430 HY+ DG+ EE EV PL SL+ ++ N ++ A + L ++L+E Sbjct: 383 DVHYETIDGEYFERIEENLDDWAAEVQPLVSLVAREM---NYLK-AYGDPLYEEYERLTE 438 Query: 431 DNEQFLVNDPTVSLSSPTFDEKNTELSTIIVDATYNYILGNITAEGFRQEVKKWRSSGGN 490 DN + +V +P L SPT+ E+ TEL II DATY YILG + +GF EV++W ++GG Sbjct: 439 DNNEIIVTNPAEPLFSPTYTERGTELQKIIDDATYKYILGELDEDGFEAEVERWLTNGGE 498 Query: 491 LIIQEYGE 498 II+E E Sbjct: 499 SIIEELNE 506 >BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 440 Score = 347 bits (889), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 190/436 (43%), Positives = 273/436 (62%), Gaps = 15/436 (3%) Query: 16 VLVLFAVIMLSACSSEDAGHSSPAGEAP-----SISILAPLHFPQTPARDIVTEIDKLTG 70 LVL +L+ C D SS G+A +S +A L+ Q P + EI+KLT Sbjct: 2 CLVLALGGVLAGCKGTD--QSSAEGKAGPDSKVKLSWMAILYHQQPPKDRAIKEIEKLTN 59 Query: 71 VRLEITWVPEGVYTDKMNTAMATGSLGKVTFVKVTDYNLVKNAIRSGAFWEIGPYLKDFP 130 L+ITWVP+ V D++N A+A G+L ++ ++ + V NA RSG FWEIG Y+KD+P Sbjct: 60 TELDITWVPDAVKEDRLNAALAAGNLPQIVTIQDIKNSSVMNAFRSGMFWEIGDYIKDYP 119 Query: 131 NLKQLDPAILDQTAVDGKFYGLYTERPSSRQGIIIRKDWLDRLHLNKPQTLEELYHVLRQ 190 NL +++ I +DGK YG+Y ERP SRQGI+IRKDWLD L+L P+TL+ELY V + Sbjct: 120 NLNKMNKLINKNVTIDGKLYGIYRERPLSRQGIVIRKDWLDNLNLKTPKTLDELYEVAKA 179 Query: 191 FTYNDPDGNGKADTLGLVDRNDLVYGVFKTLSSYFGTPNNWKRVKGQFIPEFETPEYMDT 250 FT +DPD +GK DT GL DRNDL+YG FKT+ SY G P +WK G+F P+F T EY DT Sbjct: 180 FTEDDPDKDGKDDTFGLADRNDLIYGAFKTIGSYEGMPTDWKESGGKFTPDFMTQEYKDT 239 Query: 251 MNFMKRLYHEKIINQDFALTSKEVQRDKFIRGSAGVFIGSMTDVQRLSIEAQAINPAAEL 310 MN+MK+L +N+DF +TSK Q++ F +G AG++IG+M D +++ A + + +L Sbjct: 240 MNYMKKLRDNGYMNKDFPVTSKTQQQELFSQGKAGIYIGNMVDA--VNLRDHASDKSMKL 297 Query: 311 TLINRIKGPEGY-KVWSIPNYNGLYLFSKKAIATEAELKQVLGFFDRTMDKDVANLMKYG 369 +INRIKGP+G +VW+ +NG++ F K ++ TEAELK++L FFDR ++DV +LM YG Sbjct: 298 EIINRIKGPDGKERVWASGGHNGVFAFPKTSVKTEAELKRILAFFDRIAEEDVYSLMTYG 357 Query: 370 FEGRHY-KLEDGKVILPEETSQLRVNEVSPLYSLMIADIGNRNIMEIAQKEQLTALADQL 428 +G HY K ED E + ++ PL +L+ D + L ++L Sbjct: 358 IDGVHYNKGEDKTFTRKESQVKDWQTDIQPLSALIAIDKAYLK----NTGDPLRTAYEEL 413 Query: 429 SEDNEQFLVNDPTVSL 444 +EDNE+ +V++P S Sbjct: 414 TEDNEKIIVSNPAESC 429 >BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 502 Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 166/484 (34%), Positives = 269/484 (55%), Gaps = 12/484 (2%) Query: 20 FAVIMLSACSSEDAGHSSPAGEAPSISILAPLHFPQTPARDI--VTEIDKLTGVRLEITW 77 A +M++ CS + +S+ +G +I I+APL P++P+ + ++K TG +++TW Sbjct: 14 LAAMMIAGCSHSETSNSA-SGSKDTIKIMAPLLSPESPSDKSPSLKALEKYTGKEIKVTW 72 Query: 78 VPEGVYTDKMNTAMATGSLGKVTFVKVTDYNLVKNAIRSGAFWEIGPYLKDFPNLKQLDP 137 VP+ Y DK N MA+G + +K +K ++++GAFWE+ PYLKD+ NL Q D Sbjct: 73 VPDSSYNDKFNIVMASGEMPHAIVIKDKSAGFIK-SVKAGAFWELSPYLKDYKNLSQADE 131 Query: 138 AILDQTAVDGKFYGLYTERPSSRQGIIIRKDWLDRLHLNKPQTLEELYHVLRQFTYNDPD 197 IL ++V+G+ YG+Y R R +IIR DWL + L+ P+TL++ Y VL+ F DPD Sbjct: 132 KILKNSSVNGEVYGIYRTRDLIRACMIIRTDWLKNVGLDMPETLDDFYEVLKAFKEKDPD 191 Query: 198 GNGKADTLGLVDRNDLVYG---VFKTLSSYFGTPNNWKRVKGQFIPEFETPEYMDTMNFM 254 GNGK DT G+V + G + L +FG PN + G+ IP+F T EYMD + F Sbjct: 192 GNGKDDTYGMVVPKWMGLGNGSPWDVLQIWFGAPNRYGVENGKLIPDFTTKEYMDALTFF 251 Query: 255 KRLYHEKIINQDFALTSKEVQRDKFIRGSAGVFIGS---MTDVQRLSIEAQAINPAAELT 311 K+LY E +IN+DFA+ D ++G AGV + + + +Q EA N + Sbjct: 252 KKLYDEGLINKDFAVMDSAKWNDPVVKGKAGVIVDTGSRASQIQSAMEEADESNKDI-ID 310 Query: 312 LINRIKGPEGYKVWSIPNYNGLYLFSKKAIATEAELKQVLGFFDRTMDKDVANLMKYGFE 371 ++ ++GP G + + Y+G+ K ++ TE ELK+VL F D+ DK+ L G + Sbjct: 311 IVGSLEGPNGKRTFPTSGYSGMITIPKSSVKTEKELKEVLSFLDKMNDKEAQILTNNGVK 370 Query: 372 GRHYKLEDGKVILPEETSQLRVNEVSPLYSLMIADIGNRNIMEIAQKEQLTALADQLSED 431 GR+Y+L+DG E+ ++ + E L ++ + +E QK +L + + Sbjct: 371 GRNYELKDGVFTSLEKNNKSLLYEHEGLAQFSMSIPKSEYYIE-DQKTKLFQHRKDIITE 429 Query: 432 NEQFLVNDPTVSLSSPTFDEKNTELSTIIVDATYNYILGNITAEGFRQEVKKWRSSGGNL 491 E+ V +P SL S + +K +L II+DA +I+G I +GF V+ W+ SGGN Sbjct: 430 GEKIAVFNPAESLVSDVYTQKGAQLDNIILDARTQFIIGEIDEKGFDDAVELWKKSGGNE 489 Query: 492 IIQE 495 ++++ Sbjct: 490 LMKD 493 >BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 550 Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 106/450 (23%), Positives = 174/450 (38%), Gaps = 69/450 (15%) Query: 103 KVTDYNLVKNAIRSGAFWEIGPYLKDF--PNLKQLD---PAILDQTAVDGKFYGL--YTE 155 +V D + + + SG + ++ + P LKQL P + DG YG+ ++ Sbjct: 109 QVNDTAIKADLLSSGLVMPVDEAIETYASPRLKQLFEQFPQAFYPSTKDGVRYGIPRFSG 168 Query: 156 RPSSRQGIIIRKDWLDRLHLNKPQTLEELYHVLRQFTYNDPDGNGKADTLGL-------- 207 S + IR+DWLD+ L P TLEEL H++ F DP+ GK DT+G+ Sbjct: 169 GNGSDTLLWIRQDWLDKFDLEPPTTLEELEHIMDVFVNEDPNETGKNDTIGITFAAGDYG 228 Query: 208 -----VDRNDLVYGVFKTLSSYFGTPNNW-KRVKGQFIPEFETPEYMDTMNFMKRLYHEK 261 + + V+G F P W K G + P D + + Y + Sbjct: 229 FRGGNIADSSWVFGAFGDF-----VPGAWSKGDDGSLVYGSIQPSMKDGLAKIHEWYEKG 283 Query: 262 IINQDFALTSKEVQRDKFIRGSAGVFIGSMTDVQRLSIEAQAINPAAELTLINRIKGP-- 319 + DFA+ S ++ FI G +G+ E + P A + + GP Sbjct: 284 YLATDFAILSAGDAQESFISGRSGIMAAPPWAHGYPIGEMAQVVPDAIVKPFPHVSGPNG 343 Query: 320 ------EGYKVWSIPNYNGLYLFSKKAIATEAELKQVLGFFDRTMDKDVANLMKYG-FEG 372 EGY V G +LF+K + + + T + ++ +YG FEG Sbjct: 344 QAGRRGEGYVV-------GSFLFNKDFEHMDKFFEYWDAIYGYTFGE--SDYFEYGLFEG 394 Query: 373 RHYKLEDGKVILPEETSQLRVNE--VSP---------------LYSLMIADIGNRNIMEI 415 Y +EDG+ + + E V P +YSL+ E Sbjct: 395 YDYVMEDGEPVYDHAQFEEITGEEVVDPGRYFLPTNVPTIPFEMYSLLEEFHETGREPET 454 Query: 416 AQKEQLTA-------LADQLSEDNEQFLVNDPTVSLSSPTFDEKNTELSTIIVDATYNYI 468 + L A ++ N+ ++N+ +PT ++ L + + + I Sbjct: 455 GYEAGLAGRDPDYIEAAAIVNRQNDLRIINEFN-GPPTPTMVSRSEHLERMEDELFVDII 513 Query: 469 LGNITAEGFRQEVKKWRSSGGNLIIQEYGE 498 GN + F Q V++WR SGG I +E E Sbjct: 514 YGNKPLDAFDQFVEEWRQSGGEAITEEVNE 543 >YPO3472 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 437 Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 18/153 (11%) Query: 145 VDGKFYGLYTERPSSRQ--GIIIRKDWLDRLHLNKPQTLEELYHVLRQFTYNDPDGNGKA 202 +DGK+YG+ P+S Q + +RKDW ++L L +P+ +++ + + FT+NDPDGNGK Sbjct: 130 IDGKYYGV----PTSAQTFALFVRKDWREKLGLEQPKNWQDISTLAKAFTFNDPDGNGKN 185 Query: 203 DTLGLVDRNDLVYGVFKTLSSYFGTPNNWK--------RVKGQFIPEFETPEYMDTMNFM 254 DT G + G +S+F + W+ +G+FI E P +T++FM Sbjct: 186 DTYGFILPGSTTRG----YASWFISSYLWQAGGDFIRPAGEGKFIASLEEPAATETLSFM 241 Query: 255 KRLYHEKIINQDFALTSKEVQRDKFIRGSAGVF 287 + + +K + + F G +G+F Sbjct: 242 RGMVCDKTVQPGAINATTADAIPSFRSGQSGMF 274 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 38,078,127 Number of extensions: 1628304 Number of successful extensions: 2913 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 2903 Number of HSP's successfully gapped: 8 Length of query: 506 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 395 Effective length of database: 25,576,357 Effective search space: 10102661015 Effective search space used: 10102661015 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)