BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0560.0023.p
         (243 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cgl2766 [R] COG3910 Predicted ATPase                                  162   4e-40
Cgl2765 [R] COG3910 Predicted ATPase                                  144   2e-34
HI1272 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transpo...    52   1e-06

>Cgl2766 [R] COG3910 Predicted ATPase
          Length = 240

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 129/221 (58%), Gaps = 9/221 (4%)

Query: 19  SIPGPRRYPFSLPVIRNIHQ--IDFEGKVTFFVGENGTGKSTLLEAIAANFGFNPEGGSR 76
           S+PG   Y  SL ++  +H+  ++F   +T   GENG GKSTL+EA+A     NP GGSR
Sbjct: 14  SLPG---YLSSLAIVEYLHEQPLEFRAPITVITGENGVGKSTLVEALAVGMRLNPSGGSR 70

Query: 77  NFNFSTQAS-HSELYEYMTLVKGARRPKDGFFLRAESFYNVATEVDQLAAARSYGGKSLH 135
           + NF  +    S L++ + LV+    P+D FF R E+ YNVA+  ++L   ++     LH
Sbjct: 71  HANFGREGDIVSSLHQSLKLVR-RENPRDAFFFRGETMYNVASYYEELMGEKNM--HDLH 127

Query: 136 AQSHGESFMSLLLHRFWGNGLYILDEPEAALSPSRQFALIARMDQLVRQNSQFIIATHSP 195
             SHGES  +++  RF   G ++LDEPEA LS  RQ  L+ ++  L R  +Q I+ATHSP
Sbjct: 128 KMSHGESVFAVIDRRFNNQGFFVLDEPEAGLSMLRQLELLGKLGNLARGGAQIIMATHSP 187

Query: 196 ILLAYPGAGIYVLGEEGLTKTPYEATEHYLLTKAFLNNPQG 236
           ILLA PGA I  +   G+ K  +E  E     + F+ +P+G
Sbjct: 188 ILLAIPGAEILEITSSGVAKVNFEDAEAVRAAREFVADPRG 228


>Cgl2765 [R] COG3910 Predicted ATPase
          Length = 244

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/214 (40%), Positives = 118/214 (55%), Gaps = 9/214 (4%)

Query: 32  VIRNIHQIDFEGKVTFFVGENGTGKSTLLEAIAANFGFNPEGGSRNFNFSTQASHSELYE 91
           V+R    +DF   +T   GENG GKSTLLEAIA N GF+  GG     F  + S + L  
Sbjct: 29  VLREKRMLDFRAPITVITGENGVGKSTLLEAIAINAGFDTAGGEHTGKF--KPSDNPLQT 86

Query: 92  YMTLVKGARRPKDGFFLRAESFYNVATEVDQLAAARSYGGKSLHAQSHGESFMSLLLHRF 151
                KG + P  G+FLRAE+ +NVA+     A     G  +LH  SHGES M ++ + F
Sbjct: 87  VAKAHKG-KEPMRGYFLRAETHFNVASGYRDEAP----GWVNLHHMSHGESVMHIVQNAF 141

Query: 152 WGNGLYILDEPEAALSPSRQFALIARMDQLVRQNSQFIIATHSPILLAYPGAGIYVLGEE 211
            G GLY++DEPEA LS  RQ A++A ++ L    +Q II THSP+L+A PGA I+     
Sbjct: 142 VGKGLYLMDEPEAGLSFIRQMAILAELNFLAESGAQIIIVTHSPVLMAIPGAEIWEFSAS 201

Query: 212 GLTKT--PYEATEHYLLTKAFLNNPQGMLRELMD 243
           G       +E T  +   + F  +P+ +   +MD
Sbjct: 202 GELHRGFDFEVTTAFRALRDFFEDPEEIAEYMMD 235


>HI1272 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components
          Length = 263

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 30/194 (15%)

Query: 42  EGKVTFFVGENGTGKSTLLEAIAANFGFNPEGG------------------SRNFNFSTQ 83
           E ++   +G NG GKST L+ +    G  P  G                  +R+  +  Q
Sbjct: 36  ENQICCLLGANGAGKSTFLKTL---LGLQPPIGGDIVWQGKSLSDYSPTELARHIAYVPQ 92

Query: 84  ASHSELYEYMTLVKGARRPKDGFFLR-----AESFYNVATEVDQLAAARSYGGKSLHAQS 138
           A HS L+ +  LV+         FL+      +S  ++A    Q         +  H  S
Sbjct: 93  A-HSHLFPF--LVQDMVMMGRSAFLKWYQTPKKSDLDLALMALQELEIAHLAQRYYHQLS 149

Query: 139 HGESFMSLLLHRFWGNG-LYILDEPEAALSPSRQFALIARMDQLVRQNSQFIIATHSPIL 197
            GE  + L+         L I+DEP ++L    Q  ++ ++ QL +QN   II+TH+P  
Sbjct: 150 GGEKQLVLIARAIAQQAKLLIMDEPTSSLDFGNQIRVLEKIKQLQKQNIALIISTHNPQQ 209

Query: 198 LAYPGAGIYVLGEE 211
            A+ G  I +L ++
Sbjct: 210 AAFLGDNIVLLDQQ 223


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 18,751,673
Number of extensions: 807563
Number of successful extensions: 8528
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8535
Number of HSP's successfully gapped: 3
Length of query: 243
Length of database: 38,378,431
Length adjustment: 103
Effective length of query: 140
Effective length of database: 26,499,029
Effective search space: 3709864060
Effective search space used: 3709864060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)