BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0017.p (252 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0373 [V] COG1136 ABC-type antimicrobial peptide transport sys... 270 2e-72 BH2699 [V] COG1136 ABC-type antimicrobial peptide transport syst... 268 5e-72 BS_yvcR [V] COG1136 ABC-type antimicrobial peptide transport sys... 256 2e-68 BH0753 [V] COG1136 ABC-type antimicrobial peptide transport syst... 255 5e-68 BS_yxdL [V] COG1136 ABC-type antimicrobial peptide transport sys... 247 1e-65 >CAC0373 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 19/248 (7%), Positives = 55/248 (22%) Query: 3 VITIDQLVKVYNAYKQAKGVAAIDGMSFNVEKGDFVGIMGPSGSGKTTLLNILSGVDRAT 62 I + + ++ + ++ + + + M +G I + + Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 63 SGEVYIDGQDIMKLSKDQMALFRRARIGYIFQDFNLLNSLTLEENIALPLILDKRSPEEI 122 + + + + I+ ++ ++ + F +L + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 123 EEKLVPLMQFLGIHGLKDKYPYHISGGQKQKVAAARAVISEPAVMLADEPTGNLDSKSAR 182 L L + ++ L + PT Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 183 QLMDTLTSLNEQLGSTILMVTHDPFAASFCRRIIFIRDGNVELEIRSPGDRKQFLDKILE 242 + + +EQ + D + G + G + IL Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 Query: 243 AQSVIGGD 250 Sbjct: 243 VYGTCMPM 250 >BH2699 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 268 bits (685), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 10/247 (4%), Positives = 41/247 (16%), Gaps = 1/247 (0%) Query: 3 VITIDQLVKVYNAYKQAKGVAAIDGMSFNVEKGDFVGIMGPSGSGKTTLLNILSGVDRAT 62 I + + ++ ++D ++ + + + + Sbjct: 3 QAGIIRDLLIWLE-GHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 Query: 63 SGEVYIDGQDIMKLSKDQMALFRRARIGYIFQDFNLLNSLTLEENIALPLILDKRSPEEI 122 S + Q + F+ + + Sbjct: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 Query: 123 EEKLVPLMQFLGIHGLKDKYPYHISGGQKQKVAAARAVISEPAVMLADEPTGNLDSKSAR 182 E + S +Q + + Sbjct: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 183 QLMDTLTSLNEQLGSTILMVTHDPFAASFCRRIIFIRDGNVELEIRSPGDRKQFLDKILE 242 +++ A + + E + + + + + Sbjct: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 Query: 243 AQSVIGG 249 Sbjct: 242 TVYGTCM 248 >BS_yvcR [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 20/250 (8%), Positives = 57/250 (22%) Query: 1 LDVITIDQLVKVYNAYKQAKGVAAIDGMSFNVEKGDFVGIMGPSGSGKTTLLNILSGVDR 60 +D I + + ++ + ++ + + + M +G I + Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 61 ATSGEVYIDGQDIMKLSKDQMALFRRARIGYIFQDFNLLNSLTLEENIALPLILDKRSPE 120 ++ + + + I+ ++ ++ + F +L + Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 121 EIEEKLVPLMQFLGIHGLKDKYPYHISGGQKQKVAAARAVISEPAVMLADEPTGNLDSKS 180 L L + ++ L + PT Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 181 ARQLMDTLTSLNEQLGSTILMVTHDPFAASFCRRIIFIRDGNVELEIRSPGDRKQFLDKI 240 + + +EQ + D + G + G + I Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 Query: 241 LEAQSVIGGD 250 L Sbjct: 241 LTVYGTCMPM 250 >BH0753 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 255 bits (651), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 9/249 (3%), Positives = 37/249 (14%) Query: 3 VITIDQLVKVYNAYKQAKGVAAIDGMSFNVEKGDFVGIMGPSGSGKTTLLNILSGVDRAT 62 + ++D ++ + + + + Sbjct: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 Query: 63 SGEVYIDGQDIMKLSKDQMALFRRARIGYIFQDFNLLNSLTLEENIALPLILDKRSPEEI 122 S + Q + F+ + + Sbjct: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 Query: 123 EEKLVPLMQFLGIHGLKDKYPYHISGGQKQKVAAARAVISEPAVMLADEPTGNLDSKSAR 182 E + S +Q + + Sbjct: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 183 QLMDTLTSLNEQLGSTILMVTHDPFAASFCRRIIFIRDGNVELEIRSPGDRKQFLDKILE 242 +++ A + + E + + + + + Sbjct: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 Query: 243 AQSVIGGDH 251 Sbjct: 242 TVYGTCMPM 250 >BS_yxdL [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 247 bits (631), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 12/239 (5%), Positives = 36/239 (15%) Query: 12 VYNAYKQAKGVAAIDGMSFNVEKGDFVGIMGPSGSGKTTLLNILSGVDRATSGEVYIDGQ 71 + + + + R + V + Sbjct: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 Query: 72 DIMKLSKDQMALFRRARIGYIFQDFNLLNSLTLEENIALPLILDKRSPEEIEEKLVPLMQ 131 L F + + L R P + E +P + Sbjct: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129 Query: 132 FLGIHGLKDKYPYHISGGQKQKVAAARAVISEPAVMLADEPTGNLDSKSARQLMDTLTSL 191 F+ + ++++ R + + + Sbjct: 130 FVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQD 189 Query: 192 NEQLGSTILMVTHDPFAASFCRRIIFIRDGNVELEIRSPGDRKQFLDKILEAQSVIGGD 250 + A + + + Sbjct: 190 KDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCM 248 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.138 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,437,937 Number of extensions: 813931 Number of successful extensions: 18201 Number of sequences better than 1.0e-05: 2205 Number of HSP's gapped: 15461 Number of HSP's successfully gapped: 2449 Length of query: 252 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 148 Effective length of database: 26,383,695 Effective search space: 3904786860 Effective search space used: 3904786860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)