BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0015.p (226 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0371 [TK] COG0745 Response regulators consisting of a CheY-li... 215 4e-56 CAC0224 [TK] COG0745 Response regulators consisting of a CheY-li... 195 5e-50 BH0755 [TK] COG0745 Response regulators consisting of a CheY-lik... 193 2e-49 lin1856 [TK] COG0745 Response regulators consisting of a CheY-li... 188 5e-48 SP1633 [TK] COG0745 Response regulators consisting of a CheY-lik... 180 2e-45 >CAC0371 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 228 Score = 215 bits (548), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 111/225 (49%), Positives = 156/225 (69%), Gaps = 3/225 (1%) Query: 1 MDKILVIEDDLKLQKYIQEYLQAYSFEVETITDFSRILQQVEESRPRLILLDINLPVLDG 60 M KIL+IEDD KL ++ +EYL+ Y++EV I DF ++ ++ E+ P L+LLD+NLP DG Sbjct: 1 MYKILIIEDDKKLAEFTEEYLKRYNYEVFKIFDFKKVEEEFEKINPELVLLDVNLPYYDG 60 Query: 61 FYYLKVLRKSFGMPVIILSARSDESEQIRGMEYGADDYITKPFHIGVLLAKINAVLRRVY 120 F ++ R+ P+I +SARS E EQIRG+E GADDYITKPF +LLAK+ A +RR Y Sbjct: 61 FNLCRIFRRKSKAPIIFMSARSSEIEQIRGLEMGADDYITKPFSFELLLAKVQASIRRTY 120 Query: 121 HP-AQDTG--YAVGSLRLLKESMKLQYKDQTMELSKNEFRLIHIFMQNAGEILSREELLE 177 ++D V + + K + K+ YKD+ +EL+KNE +LI ++N ++++REELLE Sbjct: 121 GEYSEDNSEVLTVSGIIVDKNTFKMTYKDKEVELTKNELKLITKLLKNINKVVTREELLE 180 Query: 178 ALWDDQVFVDDNTLTVNITRVKKKLSLYGLHNAITTKRGVGYVFD 222 LWD+ FVDDNTLTVN+TR+K KLS G+ N + KRG+GY D Sbjct: 181 ELWDESSFVDDNTLTVNVTRIKNKLSEVGIKNVVKNKRGIGYYLD 225 >CAC0224 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 223 Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 98/223 (43%), Positives = 151/223 (67%), Gaps = 5/223 (2%) Query: 1 MDKILVIEDDLKLQKYIQEYLQAYSFEVETITDFSRILQQVEESRPRLILLDINLPVLDG 60 M +I++IED+ K++ I++ L+ +SFE + DF+ I +Q + +P L+L+DINLPV DG Sbjct: 1 MYRIMIIEDEEKIRNIIKKSLEKWSFEAHAVEDFNDIFEQFVKVKPNLVLMDINLPVCDG 60 Query: 61 FYYLKVLRKSFGMPVIILSARSDESEQIRGMEYGADDYITKPFHIGVLLAKINAVLRRVY 120 FY+ +R +PVI LS+RS + + + G DDYITKPF I +L+AKINA+LRR Y Sbjct: 61 FYWCSKIRNISKVPVIFLSSRSSNMDVVMAVNMGGDDYITKPFSIEILMAKINAILRRTY 120 Query: 121 HPAQ---DTGYAVGSLRLLKESMKLQYKDQTMELSKNEFRLIHIFMQNAGEILSREELLE 177 ++ DT + LK + + Y + ++EL+KNEF++I++ M+N I+SRE++++ Sbjct: 121 SYSETEMDTIEFKDVIISLKNNT-VYYNENSIELTKNEFKIIYVLMKNHDSIVSREKIMQ 179 Query: 178 ALWDDQVFVDDNTLTVNITRVKKKLSLYGLHNAITTKRGVGYV 220 LW D+ F+DDNTLTVNI R++KKL G+ + I T +G GYV Sbjct: 180 ELWQDESFIDDNTLTVNINRLRKKLKEIGV-DFIKTIKGQGYV 221 >BH0755 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 232 Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 101/224 (45%), Positives = 137/224 (61%), Gaps = 4/224 (1%) Query: 1 MDKILVIEDDLKLQKYIQEYLQAYSFEVETITDFSRILQQVEESRPRLILLDINLPVLDG 60 M KI VIEDD K+ I +Y + Y +E + DF I Q + RP L+LLDINLP DG Sbjct: 1 MYKIFVIEDDRKMASIICQYFKKYGYEAQYAIDFDMIKQDFLDYRPDLVLLDINLPAFDG 60 Query: 61 FYYLKVLRKSFGMPVIILSARSDESEQIRGMEYGADDYITKPFHIGVLLAKINAVLRRVY 120 FY+ + LR+ +P+I LSAR+ E +Q+ +E G DDYITKPFH+ VLLAK+ VLRR Y Sbjct: 61 FYWCRQLRRLSNLPIIFLSARASEMDQVYAIENGGDDYITKPFHLEVLLAKVKGVLRRSY 120 Query: 121 H----PAQDTGYAVGSLRLLKESMKLQYKDQTMELSKNEFRLIHIFMQNAGEILSREELL 176 P V L ++ ++ Q +E S EFRL+ ++ I+SR++LL Sbjct: 121 GDYAIPLNQNILEVDGLFFYRDRNTIELNGQKVECSPKEFRLLICLAEHVENIVSRDKLL 180 Query: 177 EALWDDQVFVDDNTLTVNITRVKKKLSLYGLHNAITTKRGVGYV 220 EA+WD+ FVDDNTL VNI R +++L G+ +AI T RG GY Sbjct: 181 EAIWDEIDFVDDNTLNVNIRRGRRRLEDIGITDAIQTVRGQGYC 224 >lin1856 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 225 Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 94/225 (41%), Positives = 148/225 (65%), Gaps = 3/225 (1%) Query: 1 MDKILVIEDDLKLQKYIQEYLQAYSFEVETITDFSRILQQVEESRPRLILLDINLPVLDG 60 M K+ ++EDD ++ I+++L + FE+ + DF+ ILQ+ P+L++LD+NLP DG Sbjct: 1 MVKVYIVEDDEVIRDTIRKHLSKWGFEIGVVDDFNNILQEFLSFEPQLVILDVNLPFFDG 60 Query: 61 FYYLKVLRKSFGMPVIILSARSDESEQIRGMEYGADDYITKPFHIGVLLAKINAVLRRVY 120 FY+ +R+ +P+I LS+R+ +QI GM GAD YI KP + VL+A+INA+LRR Y Sbjct: 61 FYWCNQIREVSNVPIIFLSSRNSRMDQIMGMNMGADYYIEKPVDLDVLMARINALLRRTY 120 Query: 121 HPAQDTGYAV---GSLRLLKESMKLQYKDQTMELSKNEFRLIHIFMQNAGEILSREELLE 177 A V ++ L ++ L + + +EL+KNEF +++ M+ G I+SR+E++ Sbjct: 121 SYADLEEANVMEHNNVFLHIDTNTLTHLEDKIELTKNEFLILYELMKQKGSIVSRDEIMR 180 Query: 178 ALWDDQVFVDDNTLTVNITRVKKKLSLYGLHNAITTKRGVGYVFD 222 ALW+D+ FVDDNTLTVN+ R++KKL+ GL I TK+G GY+ + Sbjct: 181 ALWEDESFVDDNTLTVNVVRIRKKLAEIGLDEFIKTKKGQGYMIE 225 >SP1633 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 225 Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 143/222 (64%), Gaps = 5/222 (2%) Query: 1 MDKILVIEDDLKLQKYIQEYLQAYSFEVETITDFSRILQQVEESRPRLILLDINLPVLDG 60 M KIL+IEDD +++ I + L + FEV + DF +L +S P L+L+DI LP+ +G Sbjct: 1 MHKILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNG 60 Query: 61 FYYLKVLRKSFGMPVIILSARSDESEQIRGMEYGADDYITKPFHIGVLLAKINAVLRRVY 120 +++ + +RK +P++ LS+R + + + GADD++TKPF VLLAK+ +LRR Y Sbjct: 61 YHWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSY 120 Query: 121 HPAQDTG---YAVGSLRLLKESMKLQYKDQTMELSKNEFRLIHIFMQNAGEILSREELLE 177 +D YA + L +SM L Y+ Q + L+KNEF+++ + ++AG I++R++L+ Sbjct: 121 EFGRDESLLEYA--GVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMR 178 Query: 178 ALWDDQVFVDDNTLTVNITRVKKKLSLYGLHNAITTKRGVGY 219 LW+ F+DDNTL+VN+ R++KKL GL I TK+G+GY Sbjct: 179 ELWNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGY 220 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.140 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,893,150 Number of extensions: 635193 Number of successful extensions: 2473 Number of sequences better than 1.0e-05: 404 Number of HSP's gapped: 2191 Number of HSP's successfully gapped: 404 Length of query: 226 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 123 Effective length of database: 26,499,029 Effective search space: 3259380567 Effective search space used: 3259380567 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)