BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0560.0007.p
         (124 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3671_2 [M] COG0791 Cell wall-associated hydrolases (invasion-a...   112   1e-25
PA1198 [M] COG0791 Cell wall-associated hydrolases (invasion-ass...   111   3e-25
DR1325_2 [M] COG0791 Cell wall-associated hydrolases (invasion-a...   106   9e-24
NMA0440 [M] COG0791 Cell wall-associated hydrolases (invasion-as...   103   7e-23
NMB2001 [M] COG0791 Cell wall-associated hydrolases (invasion-as...   103   7e-23

>BH3671_2 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 116

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 75/109 (68%), Gaps = 4/109 (3%)

Query: 4   VLGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGDLVF 63
           ++GTPYVWGGTT  GFDCSGF+ Y+  +     +PRT      AGT VS+  +  GD+VF
Sbjct: 11  LIGTPYVWGGTTPRGFDCSGFVQYVFAQ-QGVSIPRTVAQMWNAGTSVSQPSV--GDIVF 67

Query: 64  FNTFGNGVSHAGIYIGDGQFAHSSSSKGVRISKLSDSYYRDRYVTARRV 112
           F+T G G SH GIYIG+ QF HS SS GV I+ +++SY+  RY+ A+R+
Sbjct: 68  FDTTG-GPSHNGIYIGNNQFIHSGSSTGVTIASMNNSYWASRYLGAKRL 115


>PA1198 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 205

 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 77/114 (67%), Gaps = 4/114 (3%)

Query: 4   VLGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTE-VSKDDLRLGDLV 62
           ++GTPY +GGTTA GFDCSGF+ Y+  +     LPR+T          VSKD+L+ GDL+
Sbjct: 80  LIGTPYRFGGTTAKGFDCSGFVGYLFREEAGIKLPRSTRELIDMDVPLVSKDELQPGDLL 139

Query: 63  FFNTFGNG-VSHAGIYIGDGQFAHSSSSK--GVRISKLSDSYYRDRYVTARRVV 113
           FFN  G G VSHAGIYIGDGQF HS+S +  GVR+  L  SY+   Y+ A+RV+
Sbjct: 140 FFNNRGRGRVSHAGIYIGDGQFIHSASRRGGGVRVDSLDSSYWSLSYMEAKRVL 193


>DR1325_2 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 172

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 76/115 (66%), Gaps = 4/115 (3%)

Query: 4   VLGTPYVWGGTTAAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGDLVF 63
           +LGTPYV GGT+  G DCSGF+L +M       LPR +  QA+AG  V  DDLR GDL+F
Sbjct: 54  LLGTPYVLGGTSRKGIDCSGFVLQVMTPLGV-KLPRRSADQARAGVSVDDDDLRPGDLLF 112

Query: 64  FNTFGNG-VSHAGIYIGDGQFAHSSSSKG-VRISKL-SDSYYRDRYVTARRVVSD 115
           F+T G G V+H GIY+G+  F +++S  G V + K  SD Y+  RY+ ARRV+ D
Sbjct: 113 FDTVGAGSVTHVGIYLGNDSFINANSYYGKVVVDKFKSDKYWSTRYLGARRVMMD 167


>NMA0440 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 171

 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 0/120 (0%), Positives = 0/120 (0%), Gaps = 3/120 (2%)

Query: 3   GVLGTPYVWGGTT-AAGFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGDL 61
               +       T                                               
Sbjct: 158 EEGYSGVYQNENTK                                               217

Query: 62  VFFNTF-GNGVSHAGIYIGDGQFAHSSSS-KGVRISKLSDSYYRDRYVTARRVVSDTSYR 119
                                                                       
Sbjct: 218                                                              277


>NMB2001 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 251

 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 79/120 (65%), Gaps = 3/120 (2%)

Query: 3   GVLGTPYVWGGTTAA-GFDCSGFILYIMEKFNAGDLPRTTGSQAKAGTEVSKDDLRLGDL 61
           G+LG  Y +GGT+ + GFDCSGF+ +I ++    +LPRT+  QA+ GT V++ +L+ GD+
Sbjct: 129 GLLGIAYRYGGTSVSTGFDCSGFMQHIFKRAMGINLPRTSAEQARMGTPVARSELQPGDM 188

Query: 62  VFFNTF-GNGVSHAGIYIGDGQFAHSSSS-KGVRISKLSDSYYRDRYVTARRVVSDTSYR 119
           VFF T  G+ +SH G+YIG+ +F H+  + K + I+ LS  Y+  +Y  ARRV  +   R
Sbjct: 189 VFFRTLGGSRISHVGLYIGNNRFIHAPRTGKNIEITSLSHKYWSGKYAFARRVKKNDPSR 248


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,244,594
Number of extensions: 348108
Number of successful extensions: 755
Number of sequences better than 1.0e-05: 68
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 70
Length of query: 124
Length of database: 38,378,431
Length adjustment: 90
Effective length of query: 34
Effective length of database: 27,998,371
Effective search space: 951944614
Effective search space used: 951944614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)