BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0560.0003.p
         (86 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L120883 [R] COG0110 Acetyltransferase (isoleucine patch superfam...    95   2e-20
lin0669 [R] COG0110 Acetyltransferase (isoleucine patch superfam...    56   2e-08
BH3001 [R] COG0110 Acetyltransferase (isoleucine patch superfamily)    50   1e-06
ylaD [R] COG0110 Acetyltransferase (isoleucine patch superfamily)      49   2e-06
ZylaD [R] COG0110 Acetyltransferase (isoleucine patch superfamily)     49   2e-06

>L120883 [R] COG0110 Acetyltransferase (isoleucine patch superfamily)
          Length = 203

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 56/80 (70%)

Query: 1  MNISEIKQMINSGKMYDDAAKDISALRTQAISTCRKYNYKVNTNDEYDMSILKGLFAEVG 60
          MN  ++K +INSGK YDDA  D+S  R  A+   R+YN K+N N+ Y   IL+ LF  +G
Sbjct: 1  MNKKQLKTLINSGKTYDDADLDLSEYRNHALFESRRYNQKINNNEGYHPEILENLFEHLG 60

Query: 61 ENVYIESDFRCEFGFNISIG 80
          +N YIES+FRCEFGFNI IG
Sbjct: 61 KNPYIESNFRCEFGFNIRIG 80


>lin0669 [R] COG0110 Acetyltransferase (isoleucine patch superfamily)
          Length = 301

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 4/77 (5%), Positives = 15/77 (19%), Gaps = 3/77 (3%)

Query: 4  SEIKQMINSGKMYDDAAKDISALRTQAISTCRKYNYKVNTNDEYDMSILKGLFAEVGENV 63
           +         +        S L  + +        +          I+        + +
Sbjct: 3  IDKSYCG-FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ--TTRHRIVGIHTEGAYQAI 59

Query: 64 YIESDFRCEFGFNISIG 80
          Y+++             
Sbjct: 60 YVDTPGLHMEEKRAINR 76


>BH3001 [R] COG0110 Acetyltransferase (isoleucine patch superfamily)
          Length = 186

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%)

Query: 7  KQMINSGKMYDDAAKDISALRTQAISTCRKYNYKVNTNDEYDMSILKGLFAEVGENVYIE 66
          K+ + +G+ Y     ++   R +A    R +N    T ++    ++K LF  +GE+V IE
Sbjct: 5  KEKMLAGERYKAWDPELVKDRERARRLTRLFNQTTETEEKQRTELIKELFGSMGESVNIE 64

Query: 67 SDFRCEFGFNISIG 80
            FRC++G+NI +G
Sbjct: 65 PTFRCDYGYNIHVG 78


>ylaD [R] COG0110 Acetyltransferase (isoleucine patch superfamily)
          Length = 183

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 4  SEIKQMINSGKMYDDAAKDISALRTQAISTCRKYNYKVNTNDEYDMSILKGLFAEVGENV 63
          +E ++MI +G++Y  A + +S  R +A     +YN+ +         IL  LF +V E  
Sbjct: 3  TEKEKMI-AGELYRSADETLSRDRLRARQLIHRYNHSLAEEHTLRQQILADLFGQVTE-A 60

Query: 64 YIESDFRCEFGFNISIG 80
          YIE  FRC++G+NI +G
Sbjct: 61 YIEPTFRCDYGYNIFLG 77


>ZylaD [R] COG0110 Acetyltransferase (isoleucine patch superfamily)
          Length = 183

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 4  SEIKQMINSGKMYDDAAKDISALRTQAISTCRKYNYKVNTNDEYDMSILKGLFAEVGENV 63
          +E ++MI +G++Y  A + +S  R +A     +YN+ +         IL  LF +V E  
Sbjct: 3  TEKEKMI-AGELYRSADETLSRDRLRARQLIHRYNHSLAEEHTLRQQILADLFGQVTE-A 60

Query: 64 YIESDFRCEFGFNISIG 80
          YIE  FRC++G+NI +G
Sbjct: 61 YIEPTFRCDYGYNIFLG 77


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,226,512
Number of extensions: 169244
Number of successful extensions: 301
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 7
Length of query: 86
Length of database: 38,378,431
Length adjustment: 56
Effective length of query: 30
Effective length of database: 31,919,727
Effective search space: 957591810
Effective search space used: 957591810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)