BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0100.p
         (63 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc867 [S] COG1284 Uncharacterized conserved protein                   48   3e-06
AGc866 [R] COG4976 Predicted methyltransferase (contains TPR rep...    48   3e-06
AGc869 [S] COG1284 Uncharacterized conserved protein                   48   3e-06

>AGc867 [S] COG1284 Uncharacterized conserved protein
          Length = 866

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 1   VRTVIDTGLRRTQVFSPRTGMPRLTTVPVSKASADQ 36
           VR VID+GL+R  VF P TG+ RL TV VS+ASADQ
Sbjct: 334 VRVVIDSGLQRLPVFEPATGITRLETVRVSRASADQ 369


>AGc866 [R] COG4976 Predicted methyltransferase (contains TPR repeat)
          Length = 866

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 1   VRTVIDTGLRRTQVFSPRTGMPRLTTVPVSKASADQ 36
           VR VID+GL+R  VF P TG+ RL TV VS+ASADQ
Sbjct: 334 VRVVIDSGLQRLPVFEPATGITRLETVRVSRASADQ 369


>AGc869 [S] COG1284 Uncharacterized conserved protein
          Length = 866

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 1   VRTVIDTGLRRTQVFSPRTGMPRLTTVPVSKASADQ 36
           VR VID+GL+R  VF P TG+ RL TV VS+ASADQ
Sbjct: 334 VRVVIDSGLQRLPVFEPATGITRLETVRVSRASADQ 369


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 3,904,821
Number of extensions: 110575
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 3
Length of query: 63
Length of database: 38,378,431
Length adjustment: 35
Effective length of query: 28
Effective length of database: 34,341,741
Effective search space: 961568748
Effective search space used: 961568748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)