BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0063.p
         (171 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z1319 [R] COG1092 Predicted SAM-dependent methyltransferases           65   5e-11
ECs1051 [R] COG1092 Predicted SAM-dependent methyltransferases         65   5e-11
yccW [R] COG1092 Predicted SAM-dependent methyltransferases            65   6e-11
STM1080 [R] COG1092 Predicted SAM-dependent methyltransferases         62   4e-10
YPO1445 [R] COG1092 Predicted SAM-dependent methyltransferases         53   2e-07

>Z1319 [R] COG1092 Predicted SAM-dependent methyltransferases
          Length = 367

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 8   YFDGGAALDLFAGTGGLGIEALSRGMDQAVFVDMEQKSIDTVRANLKAAKVE-AQAEVYR 66
           Y +    L+ F+ TGG  + AL  G  Q V VD  Q+++D  R N++  K++ ++AE  R
Sbjct: 189 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 248

Query: 67  NDAGRALSALEKRGRSFDLVFLDPPYRLKHGNELM 101
           +D  + L     RG  FD++ +DPP  +++ ++LM
Sbjct: 249 DDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLM 283


>ECs1051 [R] COG1092 Predicted SAM-dependent methyltransferases
          Length = 367

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 8   YFDGGAALDLFAGTGGLGIEALSRGMDQAVFVDMEQKSIDTVRANLKAAKVE-AQAEVYR 66
           Y +    L+ F+ TGG  + AL  G  Q V VD  Q+++D  R N++  K++ ++AE  R
Sbjct: 189 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 248

Query: 67  NDAGRALSALEKRGRSFDLVFLDPPYRLKHGNELM 101
           +D  + L     RG  FD++ +DPP  +++ ++LM
Sbjct: 249 DDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLM 283


>yccW [R] COG1092 Predicted SAM-dependent methyltransferases
          Length = 367

 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 8   YFDGGAALDLFAGTGGLGIEALSRGMDQAVFVDMEQKSIDTVRANLKAAKVE-AQAEVYR 66
           Y +    L+ F+ TGG  + AL  G  Q V VD  Q+++D  R N++  K++ ++AE  R
Sbjct: 189 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 248

Query: 67  NDAGRALSALEKRGRSFDLVFLDPPYRLKHGNELM 101
           +D  + L     RG  FD++ +DPP  +++ ++LM
Sbjct: 249 DDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLM 283


>STM1080 [R] COG1092 Predicted SAM-dependent methyltransferases
          Length = 403

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 8   YFDGGAALDLFAGTGGLGIEALSRGMDQAVFVDMEQKSIDTVRANLKAAKVE-AQAEVYR 66
           Y +    L+ F+ TGG  + AL  G  Q V VD  Q ++D  R N++  +++ ++AE  R
Sbjct: 225 YVENQRVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVR 284

Query: 67  NDAGRALSALEKRGRSFDLVFLDPPYRLKHGNELM 101
           +D  + L A  + G  FD++ +DPP  +++ ++LM
Sbjct: 285 DDVFKLLRAYREHGEKFDVIIMDPPKFVENKSQLM 319


>YPO1445 [R] COG1092 Predicted SAM-dependent methyltransferases
          Length = 301

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 0/94 (0%), Positives = 0/94 (0%), Gaps = 1/94 (1%)

Query: 8   YFDGGAALDLFAGTGGLGIEALSRGMDQAVFVDMEQKSIDTVRANLKAAKVE-AQAEVYR 66
                +         GL +          +     +     + A     ++  A   +  
Sbjct: 218 IERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLEL 277

Query: 67  NDAGRALSALEKRGRSFDLVFLDPPYRLKHGNEL 100
                                             
Sbjct: 278                                    311


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,125,203
Number of extensions: 446782
Number of successful extensions: 1740
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1754
Number of HSP's successfully gapped: 7
Length of query: 171
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 72
Effective length of database: 26,960,365
Effective search space: 1941146280
Effective search space used: 1941146280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)