BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0026.p
         (187 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_dinB [S] COG2318 Uncharacterized protein conserved in bacteria     132   3e-31
BS_yisT [S] COG2318 Uncharacterized protein conserved in bacteria     108   5e-24
BH3115 [S] COG2318 Uncharacterized protein conserved in bacteria       99   3e-21

>BS_dinB [S] COG2318 Uncharacterized protein conserved in bacteria
          Length = 172

 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 101/165 (61%), Gaps = 13/165 (7%)

Query: 24  FEYHVWANRKVCRYLQELTEEVYQKNIDSVFPTIYDAMVHIYVIDHGWLSFFRAGGVTDM 83
           +EY+VWAN+++   L+EL +E+Y + I SVFP+I   + H+Y+ D GW+  F    ++D 
Sbjct: 9   YEYNVWANQQIFNRLKELPKEIYHQEIQSVFPSISHVLSHVYLSDLGWIEVFSGKTLSDA 68

Query: 84  SAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDI----EVVYPS-G 138
            A    QLKE        T+ K IEE+E +   L+E++ +F  + + +    ++  PS G
Sbjct: 69  LA-LAEQLKEQ-------TEAKEIEEMEDLFLRLSERYILFLQQKEQLNKPLQIQNPSSG 120

Query: 139 AFQGRCLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLY 183
             +    + L H+VNHGTYHRGNITAMLRQ G+   PTDYG YL+
Sbjct: 121 IMKTTVSELLPHVVNHGTYHRGNITAMLRQAGYASAPTDYGLYLF 165


>BS_yisT [S] COG2318 Uncharacterized protein conserved in bacteria
          Length = 171

 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 19/170 (11%)

Query: 21  RQQFEYHVWANRKVCRYLQELTEEVYQKNIDSVFPTIYDAMVHIYVIDHGWLSFFRAGGV 80
           +Q ++YH WAN+K+  +++ L EE   + + SVFP++ D ++H+   D+ WL+     GV
Sbjct: 7   KQFYDYHSWANKKIFTHIENLPEETAYQEVKSVFPSVSDVLLHMCRADYIWLNVL--SGV 64

Query: 81  TDMSAEYLSQLKENIDSL--VASTKGKRIEELEQMLDNLAEQFRIFTGELDDIEVVYPS- 137
                      +E IDS   + S +G  +  ++Q    L  Q+  F     D+E  +   
Sbjct: 65  A---------YQEIIDSAGKLQSAQGN-MAAIKQHAAELESQYHDFFSRQTDLEQTFTMQ 114

Query: 138 ----GAFQGRCLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLY 183
               G  +    D + H+VNHGTYHRGN+TAMLRQ+ H G PTDY +YLY
Sbjct: 115 HPKLGTLESTYADTILHVVNHGTYHRGNVTAMLRQLDHSGVPTDYMYYLY 164


>BH3115 [S] COG2318 Uncharacterized protein conserved in bacteria
          Length = 169

 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 96/173 (55%), Gaps = 13/173 (7%)

Query: 16  VKQYIRQQFEYHVWANRKVCRYLQELTEEVYQKNIDSVFPTIYDAMVHIYVIDHGWLSFF 75
           +  + +  ++Y+VWAN ++  +LQ ++ E Y++ I SVFP++     H+Y++++ WL   
Sbjct: 1   MSNHAKTLYQYNVWANGRIMEHLQTISPEKYEQEIKSVFPSLAKVCSHLYLVEYLWLDIL 60

Query: 76  RAGGVTDMSAEYLSQLKENIDSLVASTKGKRIEELEQMLDNLAEQFRIFTGELDDIE--- 132
             G    ++ E + QL+   D+L        +EELE     L+E+F  F  + +++E   
Sbjct: 61  E-GKDMGVALEEVFQLQHETDAL-------PLEELEAAYRTLSERFLSFLEKEENLERRI 112

Query: 133 -VVYP-SGAFQGRCLDYLQHMVNHGTYHRGNITAMLRQMGHPGTPTDYGFYLY 183
            +  P  G  +    + + H  NHGTYHRGNI+AML Q+G     TD+ FY+Y
Sbjct: 113 LLNNPYVGERETSLAEIVLHAANHGTYHRGNISAMLHQLGDASVMTDFVFYMY 165


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,515,681
Number of extensions: 536215
Number of successful extensions: 8046
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8042
Number of HSP's successfully gapped: 3
Length of query: 187
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 87
Effective length of database: 26,845,031
Effective search space: 2335517697
Effective search space used: 2335517697
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)