BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0557.0019.p
         (320 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1937 [GER] COG0697 Permeases of the drug/metabolite transporte...   141   1e-33

>BH1937 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 298

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 151/316 (47%), Gaps = 24/316 (7%)

Query: 4   LKYLLSVLAGAMSYGILSTIVVLAYGEGYQLGEVVGTQLLTGCILAWLLALYTKVRQTRK 63
           +K++ +V  GA SYG+LST+V LAY  G     V  +Q L G    W L L T +  T+K
Sbjct: 3   IKFITAVFLGACSYGVLSTLVKLAYENGVPTAVVTSSQFLIG----WFL-LATLLAFTQK 57

Query: 64  QRSQGVTPAAARQASPALTWKQRIMLMLAGAPTVVTGLVYYQSLRYIPASLAIILLFQFT 123
           +R               LT K++I LMLAG PT + G+ YY SL  I AS+AIILLFQF 
Sbjct: 58  KRR--------------LTMKEKIQLMLAGIPTGLVGIFYYLSLVTIEASVAIILLFQFV 103

Query: 124 WISVLIQAISKRQRPDK--VXXXXXXXXXXXXXXXXXXXEKGASHFNVLGLTLGLLSAVS 181
           WI V+++++  RQ P K  V                    +G  H+  LG+  GLL+AVS
Sbjct: 104 WIGVVLESLINRQFPTKKTVGSLIILLIGTVLASGSPWFNQGTVHW--LGVLFGLLAAVS 161

Query: 182 YSMFIIFSGKAVPSAHPAYRSAWMVTGGLLLLCILFPPYXXXXXXXXXXXXXXXXXXXXX 241
           +++FI+ + K +P      RS +MV+G L+ +  +F P                      
Sbjct: 162 FALFILANAKVLPQLPTVQRSYYMVSGSLMAVLFIFGPQLFYQPLTTYGQLGWYGVLLGF 221

Query: 242 XAF-IPPVLFAIGVPHXXXXXXXXXXXXELPVAVLLSSFVLHEQVSGLQWIXXXXXXXXX 300
               IPP+LFA G+P             ELPVAVLLS  VL E V   QWI         
Sbjct: 222 FGVCIPPLLFAYGMPQIGSGLGSILSSIELPVAVLLSVIVLKETVILSQWIGVFFIFLAI 281

Query: 301 XXPELYKLRWRMADTP 316
             P +   + ++A  P
Sbjct: 282 ILPNIEWKKEQLAKNP 297


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 18,149,284
Number of extensions: 611866
Number of successful extensions: 2337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2335
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 214
Effective length of database: 26,153,027
Effective search space: 5596747778
Effective search space used: 5596747778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 116 (49.3 bits)