BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0008.p (360 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DR1093 [J] COG0180 Tryptophanyl-tRNA synthetase 322 4e-88 STM0492_2 [P] COG1226 Kef-type K+ transport systems, predicted N... 294 2e-79 STM4508 [J] COG0180 Tryptophanyl-tRNA synthetase 270 4e-72 BH2200 [J] COG0180 Tryptophanyl-tRNA synthetase 233 5e-61 DR0558 [J] COG0180 Tryptophanyl-tRNA synthetase 205 8e-53 >DR1093 [J] COG0180 Tryptophanyl-tRNA synthetase Length = 211 Score = 322 bits (826), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 0/324 (0%), Positives = 0/324 (0%), Gaps = 3/324 (0%) Query: 32 VLTGDRVTGKLHLGHYVGSLQNRVLLQEEYESFVFLADVQALTTHFEQKDLIRSHIREMT 91 + L + + + K I++ + Sbjct: 25 NFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNS 84 Query: 92 LDYLSAGIDPEKSTIFIQSMIPEIAELTIYFSMFVSVNSLRHNPTIKAEAKGRGLDE-LY 150 + + A L + ++ N Sbjct: 85 KAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRV 144 Query: 151 YGFLGYPVSQAADITFCKATIIPVGDDQLPHLELARKIVRRFNELYQPILAEPQALISNT 210 + + + K + + ++ R +P Sbjct: 145 CNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCE 204 Query: 211 PRLVGTDGNAKMSKSLGNAIALDSTAEDIAYKIKRAVTDPARVHKNDPGHPEICPIYAYH 270 Sbjct: 205 264 Query: 271 GAFQPE--HLPEIREGCERGTMGCSACKERITMALEQLIAPMRERRAYYAARPQLVDEIL 328 Sbjct: 265 324 Query: 329 ITGTKHAQGIAKETMQEVREAMKL 352 Sbjct: 325 348 >STM0492_2 [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component Length = 146 Score = 294 bits (752), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 0/328 (0%), Positives = 0/328 (0%), Gaps = 9/328 (2%) Query: 31 RVLTGDRVTGKLHLGHYVGSLQNRVLLQEE-YESFVFLADVQALTTHFEQKDLIRSHIRE 89 + + + + + ++ Sbjct: 2 VDICNHALLVGFGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEI 61 Query: 90 MTLDYLSAGIDPEKSTIFIQSMIPEIAELTIYFSMFVSVNSLRHNPT---IKAEAKGRGL 146 M L +L + +A + ++ I + + Sbjct: 62 MNLAHLDCARWLLLTIPNGYEAGEIVASARGKSPDIEIIARAHYDDEVKYITERGANQVV 121 Query: 147 DELYYGFLGYPVSQAADITFCKATIIPVGDDQLPHLELARKIVRRFNELYQPILAEPQAL 206 Sbjct: 122 MGE-- 179 Query: 207 ISNTPRLVGTDGNAKMSKSLGNAIALDSTAEDIAYKIKRAVTDPARVHKNDPGHPEICPI 266 Sbjct: 180 - 238 Query: 267 YAYHGAFQ--PEHLPEIREGCERGTMGCSACKERITMALEQLIAPMRERRAYYAARPQLV 324 Sbjct: 239 298 Query: 325 DEILITGTKHAQGIAKETMQEVREAMKL 352 Sbjct: 299 326 >STM4508 [J] COG0180 Tryptophanyl-tRNA synthetase Length = 211 Score = 270 bits (689), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 0/325 (0%), Positives = 0/325 (0%), Gaps = 4/325 (1%) Query: 32 VLTGDRVTGKLHLGHYVGSLQNRVLLQEEYESFVFLADVQALTTHFEQKDLIRSHIREMT 91 + R+ + + L DV + + + + Sbjct: 7 LEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLE 66 Query: 92 LDYLSAGIDPEKSTIFIQSMIPEIAELTIYFSMFVSVNSLRHNPTIKAEAKGRGLD-ELY 150 L + ++ I I GR + Sbjct: 67 LGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVL 126 Query: 151 YGFLGYPVSQAADITFCKATIIPVGDDQLPHLELARKIVRRFNELY-QPILAEPQALISN 209 G+P F + + + E Sbjct: 127 NTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYT 186 Query: 210 TPRLVGTDGNAKMSKSLGNAIALDSTAEDIAYKIKRAVTDPARVHKNDPGHPEICPIYAY 269 Sbjct: 187 246 Query: 270 HGAFQPE--HLPEIREGCERGTMGCSACKERITMALEQLIAPMRERRAYYAARPQLVDEI 327 Sbjct: 247 306 Query: 328 LITGTKHAQGIAKETMQEVREAMKL 352 Sbjct: 307 331 >BH2200 [J] COG0180 Tryptophanyl-tRNA synthetase Length = 346 Score = 233 bits (593), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 25/331 (7%), Positives = 49/331 (14%), Gaps = 11/331 (3%) Query: 27 LMTERVLT-GDRVTGKLHLGHYVGSLQNRVLLQEEYESFVFLADVQALTTHFEQKDLIRS 85 + R+ V+ G + + + V Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 86 HIREMTLDYLSAGIDPEKSTIFIQSMIP-EIAELTIYFSMFVSVNSLRHNPTIKAEAKGR 144 Y+ + S + + R N Sbjct: 61 TQGLTET-YVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDS-L 118 Query: 145 GLDELYYGFLGYPVSQAADITFCKATIIPVGDDQLPHLELARKIVRRFNELYQPILAEPQ 204 + Y L D L + I Sbjct: 119 KRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGV 178 Query: 205 ALISNTPRLVGTDGNAKMSKS--LGNAIALDSTAEDIAYKIKRAVTDPARVHKNDPGHPE 262 + + + K + + Sbjct: 179 SNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGF 238 Query: 263 I--CPIYAYHGAF-QPEHLPEIREGCERGTMGCSACKERITMALEQLIAPMRERRAYYAA 319 Y + R G A + +A + P + A Sbjct: 239 GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQM--ALAFV 296 Query: 320 RPQLVDEILITGTKHAQGIAKETMQEVREAM 350 R Q + G + E Sbjct: 297 RRQPFVASTLLGATTMDQLKTNIESLHLELS 327 >DR0558 [J] COG0180 Tryptophanyl-tRNA synthetase Length = 346 Score = 205 bits (522), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 19/326 (5%), Positives = 52/326 (15%), Gaps = 9/326 (2%) Query: 31 RVLTGDRVTGKLHLGHYVGSLQNRVLLQEEY--ESFVFLADVQALTT--HFEQKDLIRSH 86 LG + + + + + + + + + Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62 Query: 87 IREMTLDYLSAGIDPEKSTIFIQSMIPEIAELTIYFSMFVSVNSLRHNPTIKAEAKGRGL 146 + I + + R N Sbjct: 63 G-LTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREAL--HDSLK 119 Query: 147 DELYYGFLGYPVSQAADITFCKATIIPVGDDQLPHLELARKIVRRFNELYQPILAEPQAL 206 Y V T C + D P + L + + Sbjct: 120 RLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVS 179 Query: 207 ISNTP-RLVGTDGNAKMSKSLGNAIALDSTAEDIAYKIKRAVTDPARVHKNDPGHPEICP 265 + K I + + ++++ A + Sbjct: 180 NETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFG 239 Query: 266 IYAYHGAFQ-PEHLPEIREGCERGTMGCSACKERITMALEQLIAPMRERRAYYAARPQLV 324 ++ + ++ + A + Sbjct: 240 TLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQ 299 Query: 325 DEILITGTKHAQGIAKETMQEVREAM 350 + T +T E Sbjct: 300 PFVASTLLGATTMDQLKTNIESLHLE 325 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 26,964,632 Number of extensions: 1105589 Number of successful extensions: 1806 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 1783 Number of HSP's successfully gapped: 11 Length of query: 360 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 252 Effective length of database: 25,922,359 Effective search space: 6532434468 Effective search space used: 6532434468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)