BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0003.p (274 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 336 2e-92 lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 209 5e-54 MT2099 [G] COG0395 ABC-type sugar transport system, permease com... 185 7e-47 Rv2039c [G] COG0395 ABC-type sugar transport system, permease co... 184 1e-46 lin0761 [G] COG0395 ABC-type sugar transport system, permease co... 182 3e-46 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 165/249 (66%), Positives = 191/249 (76%) Query: 26 VPFIWMIGSSFKPENEFTVIPPTLFPSHPTFSNYRDLFVKMDFVIYLKNTLIIVLCSFVG 85 +PFIWM+ SS K + E IPPT++P T N+ LF +MDF IYLKNTLIIV SF G Sbjct: 28 LPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFFG 87 Query: 86 LFLNAMAGYAFAKFDFPGKNKFFYIILATMMIPGQVTMIPTYLIINQLHLVNTMAGIVLP 145 LFLNAMAGY FAKF F GKNK FY++LATMMIPGQVTMIP YL++N L NTM GIVLP Sbjct: 88 LFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLP 147 Query: 146 GLVGAFAIFLFRQFMTTIPIDLLEAARLDGAGELRIFFQLMVPIVKPVFAVQGILTFIGA 205 GLVGAF IFLFRQFM+TI DLLEAARLDGA E IF+++++PI +PV AVQGILTFI Sbjct: 148 GLVGAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAG 207 Query: 206 WNSFLWPLIIANDERLYTLSVGLSLLKGQYGTEFGLQMAGAAFMVVPXXXXXXXXXXXXX 265 WNSFLWPLIIANDE+ YTLSVGL LLKGQYG+ + LQMAGA FMV+P Sbjct: 208 WNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYIL 267 Query: 266 EGYTISGIK 274 +G+ +SG+K Sbjct: 268 KGFNVSGMK 276 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 101/250 (40%), Positives = 157/250 (62%), Gaps = 1/250 (0%) Query: 26 VPFIWMIGSSFKPENEFTVIPPTLFPSHPTFSNYRDLFVKMDFVIYLKNTLIIVLCSFVG 85 +PF+WMI ++FK V+PP P PT +N+ +F + +L N++++ + + +G Sbjct: 32 MPFVWMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLMNSVVVAVVTTLG 91 Query: 86 -LFLNAMAGYAFAKFDFPGKNKFFYIILATMMIPGQVTMIPTYLIINQLHLVNTMAGIVL 144 + +MA YAFA+ F G++K F + LATMM+P QVTMIP ++++ Q +++ AG+++ Sbjct: 92 QMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIV 151 Query: 145 PGLVGAFAIFLFRQFMTTIPIDLLEAARLDGAGELRIFFQLMVPIVKPVFAVQGILTFIG 204 P L F FL RQ IP +L EAA +DGA IF ++++P+ KP FA GILTF+ Sbjct: 152 PALFSVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQ 211 Query: 205 AWNSFLWPLIIANDERLYTLSVGLSLLKGQYGTEFGLQMAGAAFMVVPXXXXXXXXXXXX 264 +WNS+LWPLI+ + + + TL +GLSLL+G+YGT +GL MAG V+P Sbjct: 212 SWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKYF 271 Query: 265 XEGYTISGIK 274 +G +SG+K Sbjct: 272 IQGMAMSGMK 281 >MT2099 [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 185 bits (469), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 148/249 (59%), Gaps = 4/249 (1%) Query: 27 PFIWMIGSSFKPENEFTVIPPTLFPSHPTFSNYRDLFVKMDFVIYLKNTLIIVLCSFVG- 85 P IW + S K + E T PTLFPSHP +SNYR++F M F NT++ C G Sbjct: 32 PIIWALSGSLKADGEVT--EPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQ 89 Query: 86 LFLNAMAGYAFAKFDFPGKNKFFYIILATMMIPGQVTMIPTYLIINQLHLVNTMAGIVLP 145 +F ++AGYAFA+ F G++ F + L+T+M+P VT+IP ++++ + V+T +++P Sbjct: 90 VFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQFILMRIVGWVDTPWAMIVP 149 Query: 146 GLVG-AFAIFLFRQFMTTIPIDLLEAARLDGAGELRIFFQLMVPIVKPVFAVQGILTFIG 204 GL G AF +L RQF T+P DL EAA LDG +I++++++P +P V G+LT++ Sbjct: 150 GLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVN 209 Query: 205 AWNSFLWPLIIANDERLYTLSVGLSLLKGQYGTEFGLQMAGAAFMVVPXXXXXXXXXXXX 264 WN FLWPL++ L TL++GL L+G+Y + + MA + M+VP Sbjct: 210 VWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSF 269 Query: 265 XEGYTISGI 273 G ++G+ Sbjct: 270 VRGIAVTGL 278 >Rv2039c [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 147/249 (59%), Gaps = 4/249 (1%) Query: 27 PFIWMIGSSFKPENEFTVIPPTLFPSHPTFSNYRDLFVKMDFVIYLKNTLIIVLCSFVG- 85 P IW + S K + E T PTLFPSHP +SNYR++F M F NT++ C G Sbjct: 32 PIIWALSGSLKADGEVT--EPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQ 89 Query: 86 LFLNAMAGYAFAKFDFPGKNKFFYIILATMMIPGQVTMIPTYLIINQLHLVNTMAGIVLP 145 +F ++AGYAFA+ F G++ F + L+T+M+P VT+IP +++ + V+T +++P Sbjct: 90 VFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMIVP 149 Query: 146 GLVG-AFAIFLFRQFMTTIPIDLLEAARLDGAGELRIFFQLMVPIVKPVFAVQGILTFIG 204 GL G AF +L RQF T+P DL EAA LDG +I++++++P +P V G+LT++ Sbjct: 150 GLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVN 209 Query: 205 AWNSFLWPLIIANDERLYTLSVGLSLLKGQYGTEFGLQMAGAAFMVVPXXXXXXXXXXXX 264 WN FLWPL++ L TL++GL L+G+Y + + MA + M+VP Sbjct: 210 VWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSF 269 Query: 265 XEGYTISGI 273 G ++G+ Sbjct: 270 VRGIAVTGL 278 >lin0761 [G] COG0395 ABC-type sugar transport system, permease component Length = 291 Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 98/263 (37%), Positives = 140/263 (53%), Gaps = 15/263 (5%) Query: 27 PFIWMIGSSFKPENEFTVIPPTLFPSHPTFSNYRDLFVKMDFVIYLKNTLIIVLCS-FVG 85 P IW + +SFKP +E L P T+ NY+D+F F YL N+LI+ + Sbjct: 29 PLIWTVSTSFKPTSEILSNSMNLIPKMFTWDNYKDVFSTTPFARYLVNSLILAVGGVLTN 88 Query: 86 LFLNAMAGYAFAKFDFPGKNKFFYIILATMMIPGQVTMIPTYLIINQLHL---------- 135 LF ++AGYAFAK F GK F L +MMIP VTMIP++L++ L Sbjct: 89 LFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMIPAVVTMIPSFLVLKNFPLMGGNDITGHG 148 Query: 136 ----VNTMAGIVLPGLVGAFAIFLFRQFMTTIPIDLLEAARLDGAGELRIFFQLMVPIVK 191 +NT I++PG GAF+IF +QF T+P +L EAAR+DG E +IF+++ +P+ K Sbjct: 149 GMGFINTYWAILIPGAAGAFSIFFMKQFFETLPDELSEAARIDGCSEFKIFWKIYMPLAK 208 Query: 192 PVFAVQGILTFIGAWNSFLWPLIIANDERLYTLSVGLSLLKGQYGTEFGLQMAGAAFMVV 251 A GI+TF WN F+WPLI+ N +++ T+ VGL+ + +G MAG + Sbjct: 209 TALATLGIMTFQAGWNQFMWPLIVLNSQKMMTVQVGLASFQYNESANYGALMAGTIVSTI 268 Query: 252 PXXXXXXXXXXXXXEGYTISGIK 274 P EG +G K Sbjct: 269 PVLFVFIFAQKYFVEGIAHNGGK 291 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.146 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,532,477 Number of extensions: 672963 Number of successful extensions: 2554 Number of sequences better than 1.0e-05: 165 Number of HSP's gapped: 2379 Number of HSP's successfully gapped: 165 Length of query: 274 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 169 Effective length of database: 26,268,361 Effective search space: 4439353009 Effective search space used: 4439353009 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)