BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0002.p (299 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1842 [G] COG1175 ABC-type sugar transport systems, permease c... 315 6e-86 lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 184 1e-46 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 184 1e-46 TM0596 [G] COG1175 ABC-type sugar transport systems, permease co... 155 9e-38 BMEII0113 [G] COG1175 ABC-type sugar transport systems, permease... 152 4e-37 >lin1842 [G] COG1175 ABC-type sugar transport systems, permease components Length = 297 Score = 315 bits (807), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 158/271 (58%), Positives = 198/271 (73%) Query: 5 VKQWHKNKYPYMFIAPAVXXXXXXXXXXXXXXXXXXXXDMDLVGLADYSNISSAGFANYI 64 +KQ+ PY+FI+PA+ D+DLVGLADYS I+ G NY+ Sbjct: 1 MKQFLNKNTPYLFISPALFLLLLFSLLPILLAFVISFTDIDLVGLADYSKINFVGVDNYV 60 Query: 65 NIFKDPVFLKSMYNTMIYXXXXXXXXXXASMGVALLLNYGTGWLFKSFRVIYYMPSITNI 124 NI +DPVFLKS++NT+ Y S+G+AL++N+ +F+ FR+I+Y PSITN+ Sbjct: 61 NIMQDPVFLKSIFNTLFYVVIGVPLVIVCSLGIALMINFSQAKIFQFFRLIFYTPSITNV 120 Query: 125 VAVAVVWGYLYNGSYGLFNYILSIFGLPAQQWLQDPTLAKLSLILLAFWKSIGLNMIIFL 184 VAVAVVW YLYN +GL NY+LS L WLQDPT+AKLSLI+LA W++IG+NMIIFL Sbjct: 121 VAVAVVWSYLYNPRFGLLNYLLSFLDLGPVPWLQDPTIAKLSLIILAVWRAIGVNMIIFL 180 Query: 185 AALQGIPRSYYEAAEIDGATGWKKLRFITVPLLGFATFFVTITTLIGWIQFFEEPLVMTK 244 AALQGIPR YYEAA +DGA ++L ITVP+L FA FFVT+TT+IGW+QFFEEP VMT+ Sbjct: 181 AALQGIPREYYEAASLDGANSRQQLFKITVPMLRFAIFFVTVTTMIGWLQFFEEPFVMTE 240 Query: 245 GGPLNATMSMALFIYNNGFQLSKFGYAAAGS 275 GGPL++T S+ALFIY NGFQLSKFGYAAAGS Sbjct: 241 GGPLDSTNSVALFIYQNGFQLSKFGYAAAGS 271 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 108/293 (36%), Positives = 158/293 (53%), Gaps = 12/293 (4%) Query: 7 QWHKNKYPYMFIAPAVXXXXXXXXXXXXXXXXXXXXDMDLVGLADYSNISSAGFANYINI 66 Q H+ + Y+FIA V D D+V ++ GF NYI + Sbjct: 10 QIHQQRMAYLFIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPNW-----IGFDNYIKM 64 Query: 67 FKDPVFLKSMYNTMIYXXXXXXXXXXASMGVALLLNY---GTGWLFKSFRVIYYMPSITN 123 F+DP FL S+ NT+IY AS+G A+L+N G G LF++F +Y+P + + Sbjct: 65 FRDPYFLISLKNTIIYTALFVPLGLVASLGAAILINMNKKGAG-LFRTF---FYVPVLCS 120 Query: 124 IVAVAVVWGYLYNGSYGLFNYILSIFGLPAQQWLQDPTLAKLSLILLAFWKSIGLNMIIF 183 VA A +W +L N YGL N +L FG+ WL D A ++++++ W + G NM+IF Sbjct: 121 TVATATIWYWLLNPQYGLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIF 180 Query: 184 LAALQGIPRSYYEAAEIDGATGWKKLRFITVPLLGFATFFVTITTLIGWIQFFEEPLVMT 243 LA LQGIP + YEA++I+GA+ WK R++T P L TF VT +I Q F++ V+T Sbjct: 181 LAGLQGIPANLYEASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLT 240 Query: 244 KGGPLNATMSMALFIYNNGFQLSKFGYAAAGSXXXXXXXXXXXXXQFAVKKKE 296 KGGP N+T+++ +IYN GF K GYA+A S V K++ Sbjct: 241 KGGPGNSTITLVYYIYNEGFGGLKMGYASAISFVLFLIILVFSIINMRVNKED 293 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 106/257 (41%), Positives = 148/257 (57%), Gaps = 6/257 (2%) Query: 43 DMDLVGLADYSNISSAGFANYINIFKDPVFLKSMYNTMIYXXXXXXXXXXASMGVALLLN 102 D DLV S I GF NY +F DP F KS NT+ + + AL+LN Sbjct: 42 DWDLV-----STIHFTGFENYKRLFNDPEFWKSFRNTITFIIGYLPSVMILGLACALMLN 96 Query: 103 YGTGWLFKSFRVIYYMPSITNIVAVAVVWGYLYNGSYGLFNYILSIFGLPAQQWLQDPTL 162 L FR +Y++P IT+ VAV++VW +L+N SYGL NY LS+ G+ WL DP Sbjct: 97 QKIK-LRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAGPNWLTDPQT 155 Query: 163 AKLSLILLAFWKSIGLNMIIFLAALQGIPRSYYEAAEIDGATGWKKLRFITVPLLGFATF 222 A +++I+ + WK IG M++FL LQ I SYYEAA +DGA+ ++L IT+PLL TF Sbjct: 156 AMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFSITIPLLTPTTF 215 Query: 223 FVTITTLIGWIQFFEEPLVMTKGGPLNATMSMALFIYNNGFQLSKFGYAAAGSXXXXXXX 282 FVTI +LI Q F++ ++MT+GGP ATM++ IYN+ F+ + GYA+A S Sbjct: 216 FVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHAFRYFEMGYASAMSWILFIVI 275 Query: 283 XXXXXXQFAVKKKEVEY 299 Q ++K+ Y Sbjct: 276 FIITIIQNKLQKRWSNY 292 >TM0596 [G] COG1175 ABC-type sugar transport systems, permease components Length = 420 Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 146/251 (58%), Gaps = 7/251 (2%) Query: 54 NISSAGFANYINIFKDP-VFLKSMYNTMIYXXXXXXXXXXASMGVALLLNYGTGWLFKSF 112 N S G N++ KD +FLK++ NT+ Y S+ +ALLLN F+ F Sbjct: 170 NSSLPGLVNFLLDAKDKNLFLKALTNTLYYVILSVPSQIFISLMIALLLNSNVK--FRVF 227 Query: 113 -RVIYYMPSITNIVAVAVVWGYLYNGSYGLFNYILSIFGLPAQQWLQDPTLAKLSLILLA 171 R Y++P +T++VA+++VW +++N +GL NYILS+F + WL+D ++ +++ Sbjct: 228 FRTAYFIPFVTSVVAISLVWKWIFNDEFGLLNYILSLFNIEPISWLKDERWTIPTIAIVS 287 Query: 172 FWKSIGLNMIIFLAALQGIPRSYYEAAEIDGATGWKKLRFITVPLLGFATFFVTITTLIG 231 WK++G + +IFLA LQ I RSYYEAAE+DGA+ +K +IT PLL TFF+ I +LIG Sbjct: 288 VWKTVGYDAVIFLAGLQNIDRSYYEAAEVDGASSLQKFFYITWPLLSPTTFFLLIVSLIG 347 Query: 232 WIQFFEEPLVMTKG--GPLNAT-MSMALFIYNNGFQLSKFGYAAAGSXXXXXXXXXXXXX 288 + F E V+ G GP N + M++ ++++ ++ + G A+A + Sbjct: 348 AFKVFAEVYVLYDGLPGPYNNSGMTLVYYVFDLFYRQQRMGIASAAAYILFAIILIFTFI 407 Query: 289 QFAVKKKEVEY 299 Q+ V ++ VEY Sbjct: 408 QYRVGRRAVEY 418 >BMEII0113 [G] COG1175 ABC-type sugar transport systems, permease components Length = 270 Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 124/249 (49%), Gaps = 2/249 (0%) Query: 52 YSNISSAGFANYINIFKDPVFLKSMYNTMIYXXXXXXXXXXASMGVALLLNYGTGWLFKS 111 Y G NY +F D FL S+ NT +Y +GVALL+ G Sbjct: 23 YDGFEFIGLENYAELFSDRTFLISLKNTAVYTAIVAPASVFLGLGVALLIE-GEVRGKSF 81 Query: 112 FRVIYYMPSITNIVAVAVVWGYLYNGSYGLFNYILSIFGLPAQQWLQDPTLAKLSLILLA 171 FR +Y++P + +VA+A VW YL + + G N +L + G+ WL SL L+ Sbjct: 82 FRTVYFLPVASLLVAMATVWQYLLHPTLGPVNAMLGMIGIAGPNWLGSSETVLFSLALIG 141 Query: 172 FWKSIGLNMIIFLAALQGIPRSYYEAAEIDGA-TGWKKLRFITVPLLGFATFFVTITTLI 230 W+S+G NM++FLA L IPR Y AAE+DG W++ R +T PLLG T FVT ++I Sbjct: 142 IWQSVGFNMVLFLAGLTAIPRELYSAAEVDGVKNSWERFRLVTWPLLGATTLFVTTISII 201 Query: 231 GWIQFFEEPLVMTKGGPLNATMSMALFIYNNGFQLSKFGYAAAGSXXXXXXXXXXXXXQF 290 ++ FE +T+GGP A+ + IY GF + GYA+A + QF Sbjct: 202 NAVKVFETVKTLTEGGPNKASEVLLWTIYQEGFVYLRVGYASAMTVIFLAVLVILMLLQF 261 Query: 291 AVKKKEVEY 299 V + Y Sbjct: 262 RVLDRRTHY 270 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.141 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,740,345 Number of extensions: 646658 Number of successful extensions: 2136 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 1959 Number of HSP's successfully gapped: 152 Length of query: 299 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 193 Effective length of database: 26,153,027 Effective search space: 5047534211 Effective search space used: 5047534211 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)