BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0557.0001.p (417 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic... 379 e-105 BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasm... 143 4e-34 TM0810 [G] COG1653 ABC-type sugar transport system, periplasmic ... 137 3e-32 AGl1009 [G] COG1653 ABC-type sugar transport system, periplasmic... 125 2e-28 all1027 [G] COG1653 ABC-type sugar transport system, periplasmic... 120 5e-27 >lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 414 Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/397 (50%), Positives = 270/397 (68%), Gaps = 11/397 (2%) Query: 23 CGSSKNESASSDNKTLKVWFMGT-ADTVTPIAKMYEEKNPGIKVEVQAIPWDNAHDKLLT 81 CG SK+++ SSD+K L VW MG A ++ +A+ + K+ GI+V+VQ IPW NAHDKLLT Sbjct: 22 CGGSKDDANSSDSKVLNVWAMGDEAKSLKELAQKFT-KDTGIEVKVQVIPWANAHDKLLT 80 Query: 82 AVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYIEKYPSMKAENFFDGAVQTTKYQDKTV 141 AVASK+GPDVVQMGTTW+PEF AGAL D+ +EK +M ++ FF G+V+TT++ KT Sbjct: 81 AVASKSGPDVVQMGTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTY 140 Query: 142 AIPFYVETRAMFYRTDLLGEVGYPEGPKTWDELKDASKKLVAKGGAGHYALPIEAKDSIY 201 +P+Y ETR +FYRTDLL +VGY E PKTWDEL DA+ KL +K G Y I+ + Sbjct: 141 GVPWYAETRVLFYRTDLLKKVGYNEAPKTWDELSDAALKL-SKRGKDMYGFAIDPNEQTT 199 Query: 202 TAIFAWQNGSELIDXXXXNRKPQFNQPAYVETINFLKSFYDEGLSPKGTD--LDTVAAF- 258 IF QNGS L D + P FN+ +V+T+ +L SF G +P TD LD +F Sbjct: 200 GFIFGRQNGSPLFD---KDGTPVFNKKPFVDTVTYLDSFIKNGSAPD-TDLGLDASQSFG 255 Query: 259 KDGTMGMFISGPWMIQTVKEKAPEIDGKWAVTTLPAKKTNTSSIGGADLSIFNYSKNPDE 318 DG + MF+SGPWM+ T+K+ AP+IDGKWA LP K+ N SS+GGA+LSIF YS D+ Sbjct: 256 GDGIVPMFMSGPWMVNTLKDTAPDIDGKWATAVLPKKENNESSLGGANLSIFKYSNKKDD 315 Query: 319 AAKFIAFMAEQDAQLKFYETSNSMPALKAAWENDALK-DPMIQAFGKQLENSRPAPMVTE 377 A KF+ +M++ D QL + + +NSMPA AWE+D LK DP + FG+Q++ + P P++ + Sbjct: 316 ALKFMDYMSQPDVQLSWLKDTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQ 375 Query: 378 YEEIAKAAMASFEQITVGGADTQTELDKLNAKANELL 414 +EEIA+ S+EQI GGAD QT++D N + LL Sbjct: 376 FEEIAQLYGKSWEQIYRGGADVQTQMDTFNDQVEALL 412 >BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 398 Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 101/355 (28%), Positives = 170/355 (47%), Gaps = 21/355 (5%) Query: 52 IAKMYEEKNPGIKVEVQAIPWDNAHDKLLTAVASKNGPDVVQMGTTWIPEFAAAGALKDM 111 + K +E +NPGI + + +PWD KL T +++ D+ +GT W+ +F G + + Sbjct: 33 VKKAFEAENPGITLNFEVVPWDVLLQKLTTDISAGTNADLSIIGTRWLIDFVQQGIAEPL 92 Query: 112 APYI-EKYPSMKAENFFDGAVQTTKYQDKTVAIPFYVETRAMFYRTDLLGEVGYPEGPKT 170 Y+ +++ E F +V KT +P RAM+Y DL + G P Sbjct: 93 DGYMNDEFKGRFIETFLSPSV----LDGKTYGLPIAASVRAMYYNKDLFEKAGIKNPPAN 148 Query: 171 WDELKDASKKLVAKGGAGHYALPIEAKD---SIYTAIFAWQNGSELIDXXXXNRKPQFNQ 227 WDELK + K+ A GG +Y ++ K+ +Y W G+E+++ + + Sbjct: 149 WDELKADAAKIKALGGE-NYGFGLQGKEIETDVYYYYAMWSYGTEILN---KDGTSGLST 204 Query: 228 PAYVETINFLKSFYDEGLSPKGTDL----DTVAAFKDGTMGMFISGPWMIQTVKEKAPEI 283 P +E KS D+GL+ G D FK G +GM I+ P++ +KE+AP + Sbjct: 205 PGALEAAKLYKSMIDDGLTQPGVTSYAREDVQNLFKQGKVGMMITAPFLSNQIKEEAPNL 264 Query: 284 DGKWAVTTLPAKKTNTSSIGGADLSI--FNYSKNPDEAAKFIAFMAEQDAQLKFYETSNS 341 K+ V +PA T G S+ F SKN +EA K + F+ ++D + KF + Sbjct: 265 --KYGVAAIPAGPTGARGTYGVTDSVIMFQNSKNKEEAWKVLDFLFQKDWRAKFTQNEGF 322 Query: 342 MPALKAAWEND-ALKDPMIQAFGKQLENSRPAPMVTEYEEIAKAAMASFEQITVG 395 +P K + D + + + AF L ++R AP++ +EEIA + + I +G Sbjct: 323 LPVNKEEAKMDYYVNNADLAAFTALLPDARFAPVIPGWEEIADITSNAMQSIYLG 377 >TM0810 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 420 Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 103/315 (32%), Positives = 148/315 (46%), Gaps = 23/315 (7%) Query: 47 DTVTPIAKMYEEKNPGIKVEVQAIPWDNAHDKLLTAVASKNGPDVVQMGTTWIPEFAAAG 106 D + I YEE NP +++ + +PWD KLL A +S N PDVV + W EFA Sbjct: 36 DFIQGIIDRYEELNPDVEIVWEDVPWDVLQQKLLAAFSSGNPPDVVNLNAQWTIEFAQK- 94 Query: 107 ALKDMAPYIEKYPSMKAENFFDGAVQTTKYQDKTVAIPFYVETRAMFYRTDLLGEVG--- 163 K + P + P +FD ++ ++D IP+Y +FY ++ + G Sbjct: 95 --KVLFPLNDLLPEEVINQYFDNMIKGLTWKDGIYGIPWYTAVDVIFYNKEIFEKAGLDP 152 Query: 164 -YPEGPKTWDELKDASKKLVAKGGAGHY-ALPIEAKDSIYTAIFAWQNGSELIDXXXXNR 221 YP P+TWDE+ S ++ K G Y ALP +D +AIF W +G L NR Sbjct: 153 KYP--PRTWDEILLYS--VLIKEKTGKYGALPTIFQDP--SAIFNW-DGLNLYTVDENNR 205 Query: 222 KPQ--FNQPAYVETINFLKSFYDEGLSPK-----GTDLDTVAAFKDGTMGMFISGPWMIQ 274 + F++P Y T+N + Y + P G ++ G + M I+G Sbjct: 206 IKEVLFDRPEYAHTLNKWATLYKQKYIPSEIVQGGEWTRATELYQAGELAMLITGVQFAD 265 Query: 275 TVKEKAPEIDGKWAVTTLPAKKTNTSSIGG-ADLSIFNYSKNPDEAAKFIAFMAEQDAQL 333 VK APEI K V +PA K G + L++ SKNP EAAKF AF+A + Q+ Sbjct: 266 RVKWNAPEIYEKSDVAPIPAPKPGVRMSGWYSTLNVVRGSKNPKEAAKFAAFVANLENQI 325 Query: 334 KFYETSNSMPALKAA 348 F + P LKAA Sbjct: 326 AFCKLVTIFPTLKAA 340 >AGl1009 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 134 Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 0/412 (0%), Positives = 0/412 (0%), Gaps = 30/412 (7%) Query: 7 LVITSALLGFSLVAAGCGSSKNESASSDNKTLKVWFMGTADTVTP-IAKMYEEKNPGIKV 65 V+ S A + + + + + + Sbjct: 6 AVLGLITF-SSPAFAAS-----CEKNFTVSGVPMVTAVSYKSFQELPKAKAPAVLQKLAQ 59 Query: 66 EVQAIPWDNAHDKLLTAVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYIEKYPSMKAEN 125 V A + + + + A + + + + Sbjct: 60 AVAAEGFSGIQINKALSSIDAHQETSGSGRIQTLRVVARQKGAAVRIDAVFNIQAGQIAD 119 Query: 126 FFDGAVQTTKYQDKTVAIPFYVETRAMFYRTDLLGEVGYPEG--PKTWDELKDASKKLVA 183 Sbjct: 120 - 178 Query: 184 KGGAGHYALPIEAKDSIYTAIFAWQNGSELIDXXXXNRKPQFNQPAYVETINFLKSFYDE 243 Sbjct: 179 ----- 233 Query: 244 GLSPKGT----DLDTVAAFKDGTMGMFISGPWMIQTVKEKAPEIDGKWAVTTLPAKKTN- 298 Sbjct: 234 --- 290 Query: 299 --TSSIGGADLSIFNYSKNPDEAAKFIAFMAEQDAQLKFYETSNSMPA---LKAAWENDA 353 Sbjct: 291 -- 348 Query: 354 LKDPMIQAFGKQLENSRPAPMVTEYEEIAKAAMASFEQITVGGADTQTELDK 405 Sbjct: 349 400 >all1027 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 432 Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 95/375 (25%), Positives = 162/375 (43%), Gaps = 21/375 (5%) Query: 9 ITSALLGFS---LVAAGCGS--SKNESASSDNKTLKVWFMGTADTVT----PIAKMYEEK 59 I A+LG +V+ G+ + + +S ++ W M T + +E + Sbjct: 11 IACAMLGLITSWMVSCSTGNVNTNTQQTASGTANIEFWTMQLQPQFTNYFQSLIANFETQ 70 Query: 60 NPGIKVEVQAIPWDNAHDKLLTAVASKNGPDVVQMGTTWIPEFAAAGALKDMAPYIEKYP 119 NPGIKV +PW +K+LTAV++K PDVV + + + A A D+ K P Sbjct: 71 NPGIKVNWVDVPWAAMENKILTAVSAKTPPDVVNLNPDFASQLAGRNAWLDLD---TKVP 127 Query: 120 SMKAENFFDGAVQTTKYQDKTVAIPFYVETRAMFYRTDLLGEVGYPEGPKTWDELKDASK 179 ++ + + K+ +P+Y+ TR Y TDLL + G + P T+ EL A++ Sbjct: 128 QEARSSYLPNIWKASTLNGKSFGVPWYLTTRLTIYNTDLLKQAGISKPPATYAELAQAAQ 187 Query: 180 KLVAKGGAGHYALPIEAKDSIYTAIFAWQNGSELIDXXXXNRKPQFNQPAYVETINFLKS 239 ++ K G + + +DS Q G+ L+D K FN P + Sbjct: 188 QIKDKTGKYAFFVTFVPQDSGEVLQSFVQMGATLVDTEG---KAAFNSPQGKAAFQYWVD 244 Query: 240 FYDEGLSPKGT----DLDTVAAFKDGTMGMFISGPWMIQTVKEKAPEIDGKWAVTTLPAK 295 Y +GL PK + ++ G SGP ++T+ AP++ A+ Sbjct: 245 LYKKGLLPKEALTQGHRHAIDLYQSGETAFLASGPEFLKTITTNAPKVAQASAIAPQLTG 304 Query: 296 KTNTSSIGGADLSIFNYSKNPDEAAKFIAFMAEQDAQLKFYETSNSMPALKAAWENDALK 355 T ++ ++ + +K PD A KF F+ + QL F + +N +P+ A + K Sbjct: 305 DTGKKNVAVMNIVVPRDTKQPDAAVKFALFVTNDENQLAFAKAANVLPSTTKALADSYFK 364 Query: 356 DPMIQAFGKQLENSR 370 D I A +E +R Sbjct: 365 D--IPADASTVEKAR 377 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.129 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,109,492 Number of extensions: 1250150 Number of successful extensions: 2325 Number of sequences better than 1.0e-05: 75 Number of HSP's gapped: 2226 Number of HSP's successfully gapped: 75 Length of query: 417 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 308 Effective length of database: 25,807,025 Effective search space: 7948563700 Effective search space used: 7948563700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 117 (49.7 bits)