BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0556.0008.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all2672 [V] COG1131 ABC-type multidrug transport system, ATPase ... 202 7e-52 BB0754 [V] COG1131 ABC-type multidrug transport system, ATPase c... 161 1e-39 CAC0169 [V] COG1131 ABC-type multidrug transport system, ATPase ... 152 6e-37 sll0489 [V] COG1131 ABC-type multidrug transport system, ATPase ... 150 2e-36 AF1136 [V] COG1131 ABC-type multidrug transport system, ATPase c... 146 4e-35 >all2672 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 293 Score = 202 bits (513), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 146/235 (62%), Gaps = 1/235 (0%) Query: 1 VLVIEKVGKRYNKNFWGIKDINXXXXXXXXXXXXPNGAGKSTLMRILATISQPTQGRVTW 60 +L+I+++ K+Y ++DI+ PNGAGKS+LMR LAT+ G + Sbjct: 1 MLIIKQLNKKYPNGIQALRDISLKIDYGIFGLLGPNGAGKSSLMRTLATLQDADSGSIEL 60 Query: 61 NGRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEFLQYMAAVKGLDGSRANRRI-DELLEL 119 +G + +P R +LGYLPQDFGVYP+++A + L +A KG + R I + L+L Sbjct: 61 DGVNFLKNPQSARSILGYLPQDFGVYPSVSAEDLLDQLAVFKGFIHHQQRREIVAQQLQL 120 Query: 120 LNLNGARKRKIGGYSGGMKQRIGIAQALLNDPKVLIVDEPTVGLDPEERMRFRNLLADLS 179 +NL R++K+G +SGGM+QR GIAQALL PK++IVDEPT GLDP ER+RF NLL+++S Sbjct: 121 VNLYEQRQQKLGTFSGGMRQRFGIAQALLGSPKLVIVDEPTAGLDPAERIRFHNLLSEIS 180 Query: 180 QGRIILFSTHIVSDIEATADRIVILAKSRLLADAPPSQLLKLAEGKVWSTVIPEN 234 Q R++L STHIV D+ + I+ + +L P L+ G+VW+ + E Sbjct: 181 QDRVLLLSTHIVEDVAELCPNMAIMNRGEILRSGSPQALINALNGRVWTALHSET 235 >BB0754 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 309 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 70/186 (37%), Positives = 121/186 (65%), Gaps = 2/186 (1%) Query: 35 PNGAGKSTLMRILATISQPTQGRVTWNGRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEF 94 PNGAGKSTL++IL + P++G V G+D+ H E+ + +GY+P+ +YP L+ E+ Sbjct: 35 PNGAGKSTLIKILTSFHYPSKGNVKIFGKDIVEHSKEILQQIGYVPEKLALYPELSVKEY 94 Query: 95 LQYMAAVKGLDGSRANRRIDELLELLNLNGARKRKIGGYSGGMKQRIGIAQALLNDPKVL 154 L++++ +KG+ + + ID ++ + L + I S G +QR+GIA AL+N+PK++ Sbjct: 95 LKFISEIKGV--KKLKKEIDRVISIFKLKEVEDKLISQLSKGFRQRVGIAGALINNPKLV 152 Query: 155 IVDEPTVGLDPEERMRFRNLLADLSQGRIILFSTHIVSDIEATADRIVILAKSRLLADAP 214 I+DEPT GLDP + + F+ L +L++ ILFS+HI+S++E+ RI+I+ ++AD Sbjct: 153 ILDEPTNGLDPNQIIEFKEFLRELAKESTILFSSHILSEVESICKRIIIVNNGVIVADDT 212 Query: 215 PSQLLK 220 ++K Sbjct: 213 KENIIK 218 >CAC0169 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 310 Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 128/202 (63%), Gaps = 2/202 (0%) Query: 35 PNGAGKSTLMRILATISQPTQGRVTWNGRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEF 94 PNGAGKST++ +++T+ PT G +T + + L P E+++V+G +PQD +Y +L+A + Sbjct: 35 PNGAGKSTIVSMISTVISPTSGDITVDNKLLRQKPTEIKKVMGIVPQDIALYESLSAKDN 94 Query: 95 LQYMAAVKGLDGSRANRRIDELLELLNLNGARKRKIGGYSGGMKQRIGIAQALLNDPKVL 154 L++ + GL+G R++E+L+++ L + + + +SGGMK+R+ I AL+N+PK+L Sbjct: 95 LEFFGCLYGLNGKELKERVNEVLKIIELEDKKDQAVEEFSGGMKRRVNIGVALMNNPKLL 154 Query: 155 IVDEPTVGLDPEERMRFRNLLADLSQ--GRIILFSTHIVSDIEATADRIVILAKSRLLAD 212 I+DEPTVG+DP+ R + L++ G +++++H + ++E RI I+ +L+A Sbjct: 155 ILDEPTVGIDPQSRNHILETVKKLNKERGMTVIYTSHYMEEVEYLCKRIAIVDHGKLIAL 214 Query: 213 APPSQLLKLAEGKVWSTVIPEN 234 +L + ++ K TVI N Sbjct: 215 GTKDELKEKSKAKDTLTVIYSN 236 >sll0489 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 342 Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/192 (40%), Positives = 118/192 (61%) Query: 35 PNGAGKSTLMRILATISQPTQGRVTWNGRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEF 94 PNGAGK+T MRILA T G V G D+ +R+ +GYLP++ +Y ++T F Sbjct: 35 PNGAGKTTTMRILAGYIPATTGTVRVAGFDVHEQSLAVRKRIGYLPENPPLYGDMTVASF 94 Query: 95 LQYMAAVKGLDGSRANRRIDELLELLNLNGARKRKIGGYSGGMKQRIGIAQALLNDPKVL 154 L ++A++KG+ +R+ +E L RK I S G KQR+GIAQA+++DP V+ Sbjct: 95 LNFVASIKGVKPGDRRQRVIWAMERCQLTEKRKVLIRKLSKGFKQRVGIAQAIVHDPAVI 154 Query: 155 IVDEPTVGLDPEERMRFRNLLADLSQGRIILFSTHIVSDIEATADRIVILAKSRLLADAP 214 I+DEPTVGLDP++ + RNL+ L++ I+ STHI+ ++ T DR+ I+ + R++A Sbjct: 155 ILDEPTVGLDPKQIIEVRNLIKSLAEDHTIILSTHILPEVSMTCDRVTIINQGRVVATNT 214 Query: 215 PSQLLKLAEGKV 226 P LL +G + Sbjct: 215 PDNLLAELKGNL 226 >AF1136 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 294 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 72/185 (38%), Positives = 114/185 (61%), Gaps = 5/185 (2%) Query: 35 PNGAGKSTLMRILATISQPTQGRVTWNGRDLAAHPDELRRVLGYLPQDFGVYPNLTAVEF 94 PNGAGK+T + + +PT G V G D+ P E++ + GYLP+++G YPNLTA + Sbjct: 37 PNGAGKTTTINCCLGLIKPTSGSVRIAGMDVEEKPVEVKEICGYLPENYGFYPNLTARQN 96 Query: 95 LQYMAAVKGLDGSRANRRIDELLELLNLNGARKRKIGGYSGGMKQRIGIAQALLNDPKVL 154 L Y + + +DELL L+ L + +K+G +S GMKQR+ +AQAL+NDP+V+ Sbjct: 97 LLYFSEFY----ANPKDNVDELLALVGLQDSADKKVGEFSRGMKQRLALAQALINDPEVV 152 Query: 155 IVDEPTVGLDPEERMRFRNLLADLSQ-GRIILFSTHIVSDIEATADRIVILAKSRLLADA 213 +DEPT GLDP+ FR ++ +L+Q G+ FS+HI+S++ + I+ + R++ Sbjct: 153 FLDEPTNGLDPQGIADFRKIIRELNQKGKTFFFSSHILSEVREVCSVVGIINRGRIVKVG 212 Query: 214 PPSQL 218 S+L Sbjct: 213 KISEL 217 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,097,031 Number of extensions: 783466 Number of successful extensions: 6899 Number of sequences better than 1.0e-05: 2059 Number of HSP's gapped: 4392 Number of HSP's successfully gapped: 2225 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)