BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0556.0007.p
         (314 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0610 [S] COG3595 Uncharacterized conserved protein                  53   6e-07

>lin0610 [S] COG3595 Uncharacterized conserved protein
          Length = 366

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 160/366 (43%), Gaps = 61/366 (16%)

Query: 2   KKWIITAVVLFVVGLIGVTATMWNEGGFSLGSVEVNQEQAVAADGVKDVVLSL-NSINVT 60
           KK     +VLF++G IGV  TM +      G   + ++  ++A+ +  +  S    + + 
Sbjct: 8   KKLFFAGLVLFIIGAIGVAVTMKSGTMIEKGE-PLTKQWDLSAENINTIAFSSERDVLIE 66

Query: 61  MVKGTANEIKASLAGRVS---KKMVESTKLNLIRE-GDTVKIGV-DSNRWTVGF----SV 111
             + T  +    L G  S   KK ++  KL  + E G +  I V + + W   F    + 
Sbjct: 67  WKESTTGKNYIELKGNYSANDKKAIQ--KLEPVSEDGTSFNITVPEEDDWYNNFGKIYAY 124

Query: 112 FDVQVRVELPQQ-QYESFVFNSGTGDMNIAGVSARSVRVEADSGTVKLEGMKAGKISLEL 170
              +V V L +  +       S +GD+N++    +      +SG +K+  ++A    +  
Sbjct: 125 GQQKVTVFLTKDTKLADLKVKSHSGDINVSDFKVKKFVSSTNSGELKVNNLEANSAQMAT 184

Query: 171 GSGDIEVNNVAADT-----------------LELNGDSTDVFLGKLAAQKVKLKTGGGNI 213
            SGD++++N+ A+T                 LE+NG S DV    + A+K+K+    G+I
Sbjct: 185 SSGDLDLSNIKANTSIETGSGKTELTSLTGDLEVNGGSGDVNATGVKAKKLKIAIDSGDI 244

Query: 214 RMK---------------DVEA----ELELEADTGEVEAEMTDITHPINITTGSGEVILN 254
            +                D++A    +++ E+D+G +  E+  +T+ +   T SG++  +
Sbjct: 245 ELTNSTVTDLAVLTTSSGDIDANTKGKVQAESDSGAI--ELAGVTNNVTAKTSSGDI--D 300

Query: 255 TAERPSSAAIRFSHGSGE----LHNQWEGTAQTTAHEGD-DIVFGDGSVA--VNVKTGSG 307
            A       I  +  SGE    L   ++   +T ++ G       D + A  V VKT SG
Sbjct: 301 VAFNKQVENIEVNSDSGEVELKLPGDFKAIYETKSNSGSIKAPTSDSNTANRVTVKTSSG 360

Query: 308 DLTLGK 313
           D+T+ K
Sbjct: 361 DITIEK 366


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.311    0.130    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 22,924,655
Number of extensions: 971050
Number of successful extensions: 1886
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1871
Number of HSP's successfully gapped: 3
Length of query: 314
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 208
Effective length of database: 26,153,027
Effective search space: 5439829616
Effective search space used: 5439829616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)