BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0556.0005.p
         (106 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0571 [K] COG1695 Predicted transcriptional regulators              122   1e-28
lin0608 [K] COG1695 Predicted transcriptional regulators              119   2e-27
mll2486 [K] COG1695 Predicted transcriptional regulators              103   6e-23
CC3408 [K] COG1695 Predicted transcriptional regulators                86   2e-17
BH0406 [K] COG1695 Predicted transcriptional regulators                75   3e-14

>CAC0571 [K] COG1695 Predicted transcriptional regulators
          Length = 107

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 75/101 (74%)

Query: 1   MNIQFKKGVLDLCVLALTAREDRYGYELAVAISSKFEVAVGSVYPLLNRLTLEGYFSTYL 60
           MN Q KKG+L+LCVL++  R+D YGYEL   IS   E++ G++YPLL RL+ EG+F+TYL
Sbjct: 1   MNTQLKKGILELCVLSILDRKDCYGYELVDEISKSIEISEGTIYPLLRRLSKEGFFTTYL 60

Query: 61  RESREGPPRKYYKLTALGQNHLEELILEWRSFTVSVDQLIK 101
           +ES EGPPRKYYKLT LG+   ++L+ EW  F   V+ ++K
Sbjct: 61  QESTEGPPRKYYKLTELGREEKQKLVEEWMEFVEGVNSILK 101


>lin0608 [K] COG1695 Predicted transcriptional regulators
          Length = 110

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 74/103 (71%)

Query: 1   MNIQFKKGVLDLCVLALTAREDRYGYELAVAISSKFEVAVGSVYPLLNRLTLEGYFSTYL 60
           +N QFKKGVL+LC L L  ++D YGYELA  +S   EVA G++YP+L RL  E Y STYL
Sbjct: 3   VNPQFKKGVLELCCLFLIQKKDCYGYELANQVSKYIEVAEGAIYPVLRRLVKEEYCSTYL 62

Query: 61  RESREGPPRKYYKLTALGQNHLEELILEWRSFTVSVDQLIKEG 103
            ES EGP RKYY+LT  G+ +L ELI EW +FT SV +L+ EG
Sbjct: 63  VESNEGPSRKYYQLTVKGEIYLNELISEWNNFTDSVAKLLTEG 105


>mll2486 [K] COG1695 Predicted transcriptional regulators
          Length = 108

 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 68/100 (68%)

Query: 3   IQFKKGVLDLCVLALTAREDRYGYELAVAISSKFEVAVGSVYPLLNRLTLEGYFSTYLRE 62
           +Q +KG LDLCVLA+ +R + YGYE+A  + +   +  G++YPL+ R+  +G  +T L E
Sbjct: 7   VQLRKGALDLCVLAVLSRGESYGYEIASTLVAAVNMGEGTIYPLMRRMQNDGLVATRLVE 66

Query: 63  SREGPPRKYYKLTALGQNHLEELILEWRSFTVSVDQLIKE 102
           S  GPPRKYY+LT LGQ   E    +WRSF  +VD+L+++
Sbjct: 67  SSSGPPRKYYRLTPLGQQAFEAHRRDWRSFAGAVDRLLED 106


>CC3408 [K] COG1695 Predicted transcriptional regulators
          Length = 108

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 66/100 (66%)

Query: 1   MNIQFKKGVLDLCVLALTAREDRYGYELAVAISSKFEVAVGSVYPLLNRLTLEGYFSTYL 60
           + IQ KKGVL LCVLAL +  D Y YE+A  ++   ++  G++YPL+ R+  +G   TYL
Sbjct: 5   IEIQLKKGVLALCVLALLSHADSYAYEIASRLTRDIDMGEGTIYPLMRRMQSDGLVETYL 64

Query: 61  RESREGPPRKYYKLTALGQNHLEELILEWRSFTVSVDQLI 100
            ES+ GPPRKYY+LTA G+  L +   EW +F  +V+ ++
Sbjct: 65  VESQSGPPRKYYRLTAAGRESLAQQKAEWTAFATAVNNIV 104


>BH0406 [K] COG1695 Predicted transcriptional regulators
          Length = 174

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 4   QFKKGVLDLCVLALTAREDRYGYELAVAISSK-FEVAVGSVYPLLNRLTLEGYFSTYLRE 62
           Q  KG+L+ C+LA+  R+  YGYELAV +     EV+ GS+YP+L RL  E      +++
Sbjct: 71  QLLKGILEGCILAVIRRQSVYGYELAVKLQEHGLEVSEGSIYPILLRLQKEKLIKGTMKK 130

Query: 63  SREGPPRKYYKLTALGQNHLEELILEWRSFTVSVDQLIK 101
           S  GP RKYY LT  G   LE+    W      VD L++
Sbjct: 131 SPTGPNRKYYVLTEDGMAALEQFKQNWEQLKTPVDGLLE 169


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,818,415
Number of extensions: 269027
Number of successful extensions: 479
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 18
Length of query: 106
Length of database: 38,378,431
Length adjustment: 74
Effective length of query: 32
Effective length of database: 29,843,715
Effective search space: 954998880
Effective search space used: 954998880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)