BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0015.p (280 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3102 [P] COG1122 ABC-type cobalt transport system, ATPase com... 214 9e-56 SPy2195 [P] COG1122 ABC-type cobalt transport system, ATPase com... 209 5e-54 BS_ybxA [P] COG1122 ABC-type cobalt transport system, ATPase com... 204 1e-52 L75718 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 199 3e-51 lin2750 [P] COG1122 ABC-type cobalt transport system, ATPase com... 196 3e-50 >CAC3102 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 281 Score = 214 bits (546), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 109/279 (39%), Positives = 172/279 (61%), Gaps = 5/279 (1%) Query: 1 MIRIQDVTFYYNEPDEASGHAGLRPALSKVSLDIQPGEFVALLGRNGSGKSSLSRLLNGI 60 M+ ++V + Y DE+ A++ V+L++ GEF+ +LGRNGSGKS+L++ LN + Sbjct: 5 MVECKNVVYQYKNEDESKNTT----AVNDVTLEVNEGEFLVILGRNGSGKSTLAKHLNAL 60 Query: 61 ELPTEGTVTVDGRRTAEPHEVQEIRRAVQIVFQNPENQQVGLTVGEDIAFGLSNIGWPQQ 120 +PT+G V V+G T+ +V IR +VFQNP+NQ V V ED+AFG N+G Sbjct: 61 LVPTDGKVIVEGLDTSNEEDVWTIRSKTGMVFQNPDNQIVATIVEEDVAFGPENLGVKPS 120 Query: 121 EIRSRIAWALQLVGLEADEERPVTRLSGGEKQKLALASVLALAPRYLILDEATSMLDPVA 180 EIR R+ AL+ VG+ + LSGG+KQ++A+A VLA+ P+ ++ DE+T+MLDP Sbjct: 121 EIRERVDNALKSVGMYEYRKHEPHLLSGGQKQRVAIAGVLAMHPKCIVFDESTAMLDPKG 180 Query: 181 RRRFVETLHEVRQRVPFTLIYITHHLEEVMGADRWVLFREGRIVTSGPPSGLQKDTQLLH 240 R V T+ ++ + T+I ITH++EE + ADR V+ +G+++ SG P + KD + + Sbjct: 181 REEVVNTIMDLNKNSHITIILITHYMEEAINADRIVVMDKGKVIKSGVPREVFKDVKTMK 240 Query: 241 DCGLELPYYYKLAELLRRSGIPAP-ATLSEQELRGLLCR 278 + GL++P +LA L++ GI L+ E+ LCR Sbjct: 241 EIGLDVPQMTELAYELKKEGINVKDDILTIDEMVNELCR 279 >SPy2195 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 296 Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 108/279 (38%), Positives = 175/279 (62%), Gaps = 9/279 (3%) Query: 1 MIRIQDVTFYYNEPDEASGHAGLRPALSKVSLDIQPGEFVALLGRNGSGKSSLSRLLNGI 60 +I ++ VTF Y++ E +P L VS ++ GE+++++G NGSGKS+ RL++G+ Sbjct: 21 IIELKKVTFNYHKDQE-------KPTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGL 73 Query: 61 ELPTEGTVTVDGRRTAEPHEVQEIRRAVQIVFQNPENQQVGLTVGEDIAFGLSNIGWPQQ 120 P G++ VDG + V EIR + +VFQNP+NQ VG TV +D+AFGL N G + Sbjct: 74 LEPESGSIIVDGDLLTITN-VWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHE 132 Query: 121 EIRSRIAWALQLVGLEADEERPVTRLSGGEKQKLALASVLALAPRYLILDEATSMLDPVA 180 +I+ R+ AL+LVG++ +E+ RLSGG+KQ++A+A +A+ P+ +ILDEATSMLDP Sbjct: 133 DIKERVNHALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKG 192 Query: 181 RRRFVETLHEVRQRVPFTLIYITHHLEEVMGADRWVLFREGRIVTSGPPSGLQKDTQLLH 240 R ++T+ +R T+I ITH L+EV +DR ++ ++G++ ++ P L L Sbjct: 193 RLELIKTIKNIRDDYQLTVISITHDLDEVALSDRVLVMKDGQVESTSTPEQLFARGDELL 252 Query: 241 DCGLELPYYYKLAELLRRSGIPAP-ATLSEQELRGLLCR 278 GL++P+ + ++L+ G P L+E+EL LC+ Sbjct: 253 QLGLDIPFTTSVVQMLQEEGYPVDYGYLTEKELENQLCQ 291 >BS_ybxA [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 281 Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 108/261 (41%), Positives = 167/261 (63%), Gaps = 8/261 (3%) Query: 1 MIRIQDVTFYYNEPDEASGHAGLRPALSKVSLDIQPGEFVALLGRNGSGKSSLSRLLNGI 60 +I ++D+ F Y + E R AL VSL + GE++A++G NGSGKS+L+R LNG+ Sbjct: 6 LISVEDIVFRYRKDAE-------RRALDGVSLQVYEGEWLAIVGHNGSGKSTLARALNGL 58 Query: 61 ELPTEGTVTVDGRRTAEPHEVQEIRRAVQIVFQNPENQQVGLTVGEDIAFGLSNIGWPQQ 120 LP G + V G + E V E+R+ + +VFQNP+NQ G TV +D+AFGL N G P++ Sbjct: 59 ILPESGDIEVAGIQLTE-ESVWEVRKKIGMVFQNPDNQFFGTTVRDDVAFGLENNGVPRE 117 Query: 121 EIRSRIAWALQLVGLEADEERPVTRLSGGEKQKLALASVLALAPRYLILDEATSMLDPVA 180 E+ R+ WA++ V ++ ++ LSGG+KQ++A+A V+A P +ILDEATSMLDP+ Sbjct: 118 EMIERVDWAVKQVNMQDFLDQEPHHLSGGQKQRVAIAGVIAARPDIIILDEATSMLDPIG 177 Query: 181 RRRFVETLHEVRQRVPFTLIYITHHLEEVMGADRWVLFREGRIVTSGPPSGLQKDTQLLH 240 R +ET+ ++++ T+I ITH L E ADR ++ G+ GPP + K + L Sbjct: 178 REEVLETVRHLKEQGMATVISITHDLNEAAKADRIIVMNGGKKYAEGPPEEIFKLNKGLV 237 Query: 241 DCGLELPYYYKLAELLRRSGI 261 GL+LP+ ++L++LLR +G+ Sbjct: 238 RIGLDLPFSFQLSQLLRENGL 258 >L75718 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 277 Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 107/279 (38%), Positives = 174/279 (62%), Gaps = 11/279 (3%) Query: 1 MIRIQDVTFYYNEPDEASGHAGLRPALSKVSLDIQPGEFVALLGRNGSGKSSLSRLLNGI 60 ++ ++++ F Y + + + L+ VS I GE+V+++G+NGSGKS+ +RL++G+ Sbjct: 4 ILEVENLVFKYEKESDVN-------QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL 56 Query: 61 ELPTEGTVTVDGRR-TAEPHEVQEIRRAVQIVFQNPENQQVGLTVGEDIAFGLSNIGWPQ 119 EG V +DG TAE V +RR + +VFQNP+NQ VG TV +D+AFG+ N G P+ Sbjct: 57 FEEFEGKVKIDGELLTAE--NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPR 114 Query: 120 QEIRSRIAWALQLVGLEADEERPVTRLSGGEKQKLALASVLALAPRYLILDEATSMLDPV 179 +E+ R+ AL V + + R RLSGG+KQ++A+A ++AL P +ILDE+TSMLDP Sbjct: 115 EEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPT 174 Query: 180 ARRRFVETLHEVRQRVPFTLIYITHHLEEVMGADRWVLFREGRIVTSGPPSGLQKDTQLL 239 R+ + +HE++++ T++ ITH L+E +DR ++ + G I+ PS L ++ + Sbjct: 175 GRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDM 234 Query: 240 HDCGLELPYYYKLAELLRRSGIPAPAT-LSEQELRGLLC 277 + GL++P+ L + LR++G P LSE EL LL Sbjct: 235 VEIGLDVPFSSNLMKDLRKNGFDLPEKYLSEDELVELLA 273 >lin2750 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 279 Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 112/279 (40%), Positives = 165/279 (59%), Gaps = 10/279 (3%) Query: 1 MIRIQDVTFYYNEPDEASGHAGLRPALSKVSLDIQPGEFVALLGRNGSGKSSLSRLLNGI 60 +R++ V + Y + + + A+ VS+ Q GE+VAL+G NGSGKS++++LLNG+ Sbjct: 5 FVRLEHVFYKYEDTE--------KYAVKDVSISAQKGEWVALVGHNGSGKSTIAKLLNGL 56 Query: 61 ELPTEGTVTVDGRRTAEPHEVQEIRRAVQIVFQNPENQQVGLTVGEDIAFGLSNIGWPQQ 120 P +G + + G + EIRR V +VFQNP+NQ VG TV +D+AFGL N G P Sbjct: 57 LFPEDGLIKI-GHFVLSEKNIWEIRRQVGMVFQNPDNQFVGATVQDDVAFGLENHGVPHD 115 Query: 121 EIRSRIAWALQLVGLEADEERPVTRLSGGEKQKLALASVLALAPRYLILDEATSMLDPVA 180 + R+ AL VG+++ RLSGG+KQ++A+A VLAL P +ILDEATSMLDP Sbjct: 116 TMVERVESALNEVGMQSYALHEPARLSGGQKQRVAIAGVLALQPDVIILDEATSMLDPRG 175 Query: 181 RRRFVETLHEVRQRVPFTLIYITHHLEEVMGADRWVLFREGRIVTSGPPSGLQKDTQLLH 240 R +ET+ +R++ T+I ITH L+EV+ ADR ++ G I + G P + + + Sbjct: 176 RAEVMETIRIMREQEDITVISITHDLDEVLFADRVIVMNNGEIHSEGTPKEIFEQADAMR 235 Query: 241 DCGLELPYYYKLAELLRRSGIPAPAT-LSEQELRGLLCR 278 GL +P+ +L E L G +T LSE L L + Sbjct: 236 AIGLGVPFIIELQEKLVAGGFETGSTVLSEGALLDQLWK 274 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,117,878 Number of extensions: 863772 Number of successful extensions: 21804 Number of sequences better than 1.0e-05: 2072 Number of HSP's gapped: 19225 Number of HSP's successfully gapped: 2290 Length of query: 280 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 175 Effective length of database: 26,268,361 Effective search space: 4596963175 Effective search space used: 4596963175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)