BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0014.p (220 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3101 [P] COG1122 ABC-type cobalt transport system, ATPase com... 183 2e-46 TM0222 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 163 2e-40 BS_ybaE [P] COG1122 ABC-type cobalt transport system, ATPase com... 160 1e-39 PAB0249 [P] COG1122 ABC-type cobalt transport system, ATPase com... 151 6e-37 SP2220 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 150 2e-36 >CAC3101 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 286 Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 135/207 (65%), Gaps = 6/207 (2%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLNRQPEQFD- 60 L + +T++ GE G +GSGKST +Q + G L P+ G++++D D + + + + Sbjct: 23 LDNVNITIEDGEFAVFIGHTGSGKSTLIQQINGLLKPTSGSIFIDDVD--ITDKSVKLND 80 Query: 61 ---RIGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKDR 117 ++G +FQYPE+QLF T+ +DIAFG R+ LS E +V+KAM+ V L+Y FKD+ Sbjct: 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPRNMGLSEEEVSTRVKKAMKMVGLEYNDFKDK 140 Query: 118 SPFELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIW 177 SPFELSGG+KRRVAIAGVV +EP+VLILDEPTAGLD + R + + + +E +TII Sbjct: 141 SPFELSGGQKRRVAIAGVVAMEPKVLILDEPTAGLDPKGRDDILYEIKKLQKEYKMTIIL 200 Query: 178 VSHQLEEILEHAARMIALMAGQXXXXG 204 VSH +E++ + A ++ + + G Sbjct: 201 VSHSMEDVAKVADKIFVMYDSRCILSG 227 >TM0222 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 266 Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 127/206 (61%), Gaps = 7/206 (3%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLNRQPEQFDR 61 L + L +++GE L VAG +GSGKST LQ++ G + P+ G++ DG + E Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG---ERKKGYEIRRN 79 Query: 62 IGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAK-VRKAMQAVQLDYGKFKDRSPF 120 IG FQYPE Q F+ V++++AF +++ P+ V+KAM+ V LD+ FKDR PF Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKN--FYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF 137 Query: 121 ELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIWVSH 180 LSGGEKRRVAIA V+V EP++LILDEP GLD + +T L ++ + G T+I +SH Sbjct: 138 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISH 196 Query: 181 QLEEILEHAARMIALMAGQXXXXGWR 206 +E ++ H R++ L G+ G R Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTR 222 >BS_ybaE [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 566 Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 12/204 (5%), Positives = 36/204 (17%), Gaps = 5/204 (2%) Query: 5 LQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLNRQPEQFDR--- 61 L + + ++ L ++ +L+ + Q Sbjct: 13 LWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVT 72 Query: 62 -IGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKDRSPF 120 E L + + + + + + + Q + P Sbjct: 73 PESLRNAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTL-RIPYYRPL 131 Query: 121 ELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIWVSH 180 E + + + A + H Sbjct: 132 EPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYLRSTLH 191 Query: 181 QLEEILEHAARMIALMAGQXXXXG 204 A+ + + Sbjct: 192 WHNGDAVKASHLHQRLLMLLQLPA 215 >PAB0249 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 280 Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 85/208 (40%), Positives = 127/208 (61%), Gaps = 7/208 (3%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPS-----EGNLYLDGTDPHLNRQP 56 L + L V KGE L + G SGSGKSTF L G + S EGN+++DG + + Sbjct: 21 LRDVNLNVKKGEFLGIIGPSGSGKSTFCLTLNGLIPHSINGEFEGNVFVDGLNTREHSVA 80 Query: 57 EQFDRIGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKD 116 E R+G +FQ P+ QLF+ TV E++AF L + + E ++R A++ V+L + K ++ Sbjct: 81 ELSTRVGLVFQNPDSQLFNMTVLEEVAFALENLGVEREEMWRRIRWALKLVKL-WDK-RE 138 Query: 117 RSPFELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITII 176 P LSGGEK+R+AIA V+V++P+VL+LDEPT+ LD R + L+ +N+E+ ITII Sbjct: 139 EFPPNLSGGEKQRLAIASVLVMKPKVLVLDEPTSQLDPLGREEVLSLVRLLNKEEKITII 198 Query: 177 WVSHQLEEILEHAARMIALMAGQXXXXG 204 V H + +LEHA R++ G+ G Sbjct: 199 LVEHNTDFLLEHADRIVVFDGGRVVMEG 226 >SP2220 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 279 Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 128/207 (61%), Gaps = 6/207 (2%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGT---DPHLNRQPEQ 58 L + LT++ G A+ G +GSGKST LQLL G L PS+G++ + T N+ Q Sbjct: 23 LSDVSLTIEDGSYTALIGHTGSGKSTILQLLNGLLVPSQGSVRVFDTLITSTSKNKDIRQ 82 Query: 59 FDR-IGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKDR 117 + +G +FQ+ E+Q+F TV +D+AFG ++ +S E R+ + V +D F DR Sbjct: 83 IRKQVGLVFQFAENQIFEETVLKDVAFGPQNFGVSEEDAVKTAREKLALVGIDESLF-DR 141 Query: 118 SPFELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIW 177 SPFELSGG+ RRVAIAG++ +EP +L+LDEPTAGLD R L L ++ + G+TI+ Sbjct: 142 SPFELSGGQMRRVAIAGILAMEPAILVLDEPTAGLDPLGRKELMTLFKKLH-QSGMTIVL 200 Query: 178 VSHQLEEILEHAARMIALMAGQXXXXG 204 V+H ++++ E+A ++ + G+ G Sbjct: 201 VTHLMDDVAEYANQVYVMEKGRLVKGG 227 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,757,826 Number of extensions: 624770 Number of successful extensions: 7235 Number of sequences better than 1.0e-05: 2170 Number of HSP's gapped: 4551 Number of HSP's successfully gapped: 2408 Length of query: 220 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 118 Effective length of database: 26,614,363 Effective search space: 3140494834 Effective search space used: 3140494834 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)