BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0554.0003.p
         (333 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L143292 [S] COG3589 Uncharacterized conserved protein                 236   3e-62
L176316 [S] COG3589 Uncharacterized conserved protein                  98   2e-20

>L143292 [S] COG3589 Uncharacterized conserved protein
          Length = 353

 Score =  236 bits (602), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 130/319 (40%), Positives = 193/319 (60%), Gaps = 16/319 (5%)

Query: 3   YLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEHFS-- 60
           Y+  M  +GF  IFTS+ I              +G  A+K+++  MVD+S +  E     
Sbjct: 19  YIDKMTNHGFKGIFTSMHIPEDEASLYKKRLIDLGTAAKKNHLKLMVDISGQALEKAGCS 78

Query: 61  ---LQQLKDSGVTGLRIDNGMEIAEIAGLTHEWRVALNASTIDQAFLDGLRGQQANFASL 117
              +++L++ GVTGLR+D  +    IA ++ +  V+LNASTI Q  +D L+  +ANF  L
Sbjct: 79  IDRVEELQELGVTGLRMDYHISNETIAQVSQKMTVSLNASTIRQEDIDELKEYKANFNQL 138

Query: 118 EAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGPLHEGLPSLEKHRHL 177
           EAWHNYYPRPETGL    F  +N +L+     V AFIPGD  LR PL+EGLP+LE HR+ 
Sbjct: 139 EAWHNYYPRPETGLSRESFLRKNEFLKRNSFKVMAFIPGDDSLRHPLYEGLPTLEAHRYQ 198

Query: 178 SPFAGYLELVQECFVDHVLIGDLSV---SSWTMQQFLAWNEGAVLLGVEKQRPSHVWEAV 234
            P +  L++ +   +DH+ +GD  +   ++W + Q+L   EG ++L  +  + ++ +  V
Sbjct: 199 HPLSSLLDM-ESLNIDHIYVGDGGLKARTAWQINQYL--QEGELVL--QATQATNDFAKV 253

Query: 235 ---HHNRPDIARDVIRSEEARHHFRGSILPEHTVERPAGALTIDNDKYLRYRGEFQIVLQ 291
              H NR D ARDVIRS +AR +    I PE+T+ER  G++TIDN +Y RY GE QI  +
Sbjct: 254 LGEHENRQDDARDVIRSAQARFNEISEINPENTIERKKGSITIDNCEYGRYMGEIQITKR 313

Query: 292 PLPADERVNVIGYVAQRDI 310
            LPAD++VNV+G + + D+
Sbjct: 314 NLPADKKVNVVGNIIKEDL 332


>L176316 [S] COG3589 Uncharacterized conserved protein
          Length = 364

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 137/327 (41%), Gaps = 21/327 (6%)

Query: 3   YLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEHFS-- 60
           YL      GF  +FTSL                +  +A +  M  MVD++P  F   +  
Sbjct: 21  YLDLAHQYGFKRVFTSLLEIDGDKEGVLAAFKKVVDYANQLGMEVMVDINPGLFTQLNIS 80

Query: 61  ---LQQLKDSGVTGLRIDNGMEIAEIAGLT---HEWRVALNASTIDQAFLDGLRGQQANF 114
              L    + G  G+R+D G   AE A +T   +  ++ +N S     ++D +     + 
Sbjct: 81  YDDLSFFHEMGADGVRLDIGFTGAEEARMTRNPYGIKIEINMSQ-GTTYVDSIMDYSPDT 139

Query: 115 ASLEAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGP--LHEGLPSLE 172
             L   HN+YP   TGLE   +       +   L   AF+       GP    +GL +LE
Sbjct: 140 EKLLGSHNFYPHRYTGLEFNHYLKCTEKFKGYNLNTMAFVNSQAATFGPWPTQDGLCTLE 199

Query: 173 KHRHLSPFAGYLELVQECFVDHVLIGDLSVSSWTMQQFL-AWNEGAVLLGV-------EK 224
            HR L              +D V I +   S   ++    A+N     + V       E 
Sbjct: 200 DHRSLEIATQVKHYKLLGGIDDVTIANAYASEEELKAMSQAFNASMPEIKVVPRETISEN 259

Query: 225 QRPSHVWEAVHHNRPDIARDVIRSEEARHHFRGSILPEHTVER-PAGALTIDNDKYLRYR 283
           +R   ++EA H  R D +  ++RS   R  ++    P H  ++   G + IDN+ Y +Y+
Sbjct: 260 ERKC-LFEATHSYRGDKSAYMLRSTMTRITYKDLEFPAHDTDKIQRGDVIIDNEGYGQYK 318

Query: 284 GEFQIVLQPLPADERVNVIGYVAQRDI 310
           GE QI L+ +  D RVNV+G +A  ++
Sbjct: 319 GETQIALREMENDGRVNVVGRIADDEL 345


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 24,011,555
Number of extensions: 946688
Number of successful extensions: 1929
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1925
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 38,378,431
Length adjustment: 107
Effective length of query: 226
Effective length of database: 26,037,693
Effective search space: 5884518618
Effective search space used: 5884518618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)