BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0001.p (303 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC0690 [R] COG2103 Predicted sugar phosphate isomerase 297 1e-80 mll7248 [R] COG2103 Predicted sugar phosphate isomerase 283 2e-76 VC0206 [R] COG2103 Predicted sugar phosphate isomerase 277 2e-74 mlr4770 [R] COG2103 Predicted sugar phosphate isomerase 146 4e-35 >VC0690 [R] COG2103 Predicted sugar phosphate isomerase Length = 307 Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 147/297 (49%), Positives = 207/297 (69%) Query: 5 LENLTTETRNQRTLELDQLSPAAVLKLMQEEDEKVSLAVKEKLGEIEKVVTCVVRSFKQG 64 L +L +E RN T+++D LS +++ + ++D++V LAV+ L +I + V + +FKQG Sbjct: 10 LSHLVSEGRNPDTMDIDLLSSQEIVERLNQQDKQVPLAVEAVLPQIAQAVDKITAAFKQG 69 Query: 65 GRLIYTGAGTSGRLGILDAVECVPTFGTGPDMVQGLIAGGETAIRLAVEGAEDSGEQGEA 124 GRLIY GAGTSGRLG+LDA EC PTFG MV GLIAGG+ A+ A EGAED+ G Sbjct: 70 GRLIYLGAGTSGRLGVLDASECPPTFGVSDQMVIGLIAGGKEAMFTAQEGAEDNATLGAH 129 Query: 125 DLKQLNLTHNDTVLGIAASGRTPYVIGALKYAARIGASTASLSCNPDAEISKYAQYPIEI 184 DL+Q++ + D ++GIAASGRTPYVIGAL+YA +GA+T +LSCNPD+ I++ AQ I Sbjct: 130 DLQQIDFSSKDVLVGIAASGRTPYVIGALEYANDLGATTIALSCNPDSPIAEIAQIAISP 189 Query: 185 LTGAEILTGSTRLKAGTAQKMVLNMISTAAMIGIGKVYSNLMVDVQPTNEKLVIRAKSII 244 + G E LTGSTRLK+GTAQK+VLNM++TA+MI +GK Y NLMVDV+ TN KL+ RA I+ Sbjct: 190 VVGPEALTGSTRLKSGTAQKLVLNMLTTASMIRLGKSYQNLMVDVRATNRKLIARAVRIV 249 Query: 245 SEITGCDMDTASIYYERSHHQVKVAVVMXXXXXXXXXXXXRLQEAGGFIRQAVQHHK 301 + T C + A + SH+ K+A++M +L ++ GF+R+A++ H+ Sbjct: 250 MQATDCQREEAEALLKESHNNAKLAILMHLTGMNYEQATAKLSQSDGFLRRAMEEHE 306 >mll7248 [R] COG2103 Predicted sugar phosphate isomerase Length = 301 Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 0/293 (0%), Positives = 0/293 (0%) Query: 5 LENLTTETRNQRTLELDQLSPAAVLKLMQEEDEKVSLAVKEKLGEIEKVVTCVVRSFKQG 64 + ++ L++L + ++ V + + Sbjct: 10 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME 69 Query: 65 GRLIYTGAGTSGRLGILDAVECVPTFGTGPDMVQGLIAGGETAIRLAVEGAEDSGEQGEA 124 + + VE V G + Sbjct: 70 EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNV 129 Query: 125 DLKQLNLTHNDTVLGIAASGRTPYVIGALKYAARIGASTASLSCNPDAEISKYAQYPIEI 184 K L H + + A+ Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRS 189 Query: 185 LTGAEILTGSTRLKAGTAQKMVLNMISTAAMIGIGKVYSNLMVDVQPTNEKLVIRAKSII 244 +L ++ ++ + + + + + Sbjct: 190 QRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGN 249 Query: 245 SEITGCDMDTASIYYERSHHQVKVAVVMXXXXXXXXXXXXRLQEAGGFIRQAV 297 Sbjct: 250 302 >VC0206 [R] COG2103 Predicted sugar phosphate isomerase Length = 305 Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 144/300 (48%), Positives = 196/300 (65%) Query: 1 MNILLENLTTETRNQRTLELDQLSPAAVLKLMQEEDEKVSLAVKEKLGEIEKVVTCVVRS 60 M I L L TE+RN + ++D L +LK++ ++D+ V+LAV + L ++ + V + + Sbjct: 6 MKIDLTRLVTESRNPASEQIDTLPTLDMLKVINQQDQLVALAVAQTLPQVAQAVEAIATA 65 Query: 61 FKQGGRLIYTGAGTSGRLGILDAVECVPTFGTGPDMVQGLIAGGETAIRLAVEGAEDSGE 120 F QGGRLIY GAGTSGRLGILDA EC PT+G+ P+ V GLIAGG TAI AVE AED+ E Sbjct: 66 FAQGGRLIYMGAGTSGRLGILDASECPPTYGSQPEQVIGLIAGGHTAILKAVENAEDNRE 125 Query: 121 QGEADLKQLNLTHNDTVLGIAASGRTPYVIGALKYAARIGASTASLSCNPDAEISKYAQY 180 G++DLK L+L+ D ++GIAASGRTPYVI ++YA +GA+ SL+CNP + YA Sbjct: 126 LGQSDLKALHLSEKDVLVGIAASGRTPYVIAGMEYARSVGATVVSLACNPGCPMEAYADI 185 Query: 181 PIEILTGAEILTGSTRLKAGTAQKMVLNMISTAAMIGIGKVYSNLMVDVQPTNEKLVIRA 240 I + GAE++TGS+R+KAGTAQK+VLNM++T AMI GKV+ NLMVDV+ TN KL+ R Sbjct: 186 VITPVVGAEVVTGSSRMKAGTAQKLVLNMLTTGAMIKSGKVFGNLMVDVEATNAKLIQRQ 245 Query: 241 KSIISEITGCDMDTASIYYERSHHQVKVAVVMXXXXXXXXXXXXRLQEAGGFIRQAVQHH 300 +I+ E TG + A K A++M +L + GFIR A+ Sbjct: 246 TNIVVEATGVSAEQAEAALAACGRHCKTAILMILGGFSAEQAAQKLTQHQGFIRAALNQE 305 >mlr4770 [R] COG2103 Predicted sugar phosphate isomerase Length = 301 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 9/263 (3%), Positives = 49/263 (18%) Query: 10 TETRNQRTLELDQLSPAAVLKLMQEEDEKVSLAVKEKLGEIEKVVTCVVRSFKQGGRLIY 69 + + + + +L + + ++ + + Sbjct: 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPG 65 Query: 70 TGAGTSGRLGILDAVECVPTFGTGPDMVQGLIAGGETAIRLAVEGAEDSGEQGEADLKQL 129 + L + G ++ + T V G+ Sbjct: 66 LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNK 125 Query: 130 NLTHNDTVLGIAASGRTPYVIGALKYAARIGASTASLSCNPDAEISKYAQYPIEILTGAE 189 + + + L + ++ + Sbjct: 126 VDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYI 185 Query: 190 ILTGSTRLKAGTAQKMVLNMISTAAMIGIGKVYSNLMVDVQPTNEKLVIRAKSIISEITG 249 + + ++ ++ + + + + + + + + Sbjct: 186 TDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKM 245 Query: 250 CDMDTASIYYERSHHQVKVAVVM 272 + + K M Sbjct: 246 VIGNKGAKIKTIGIEARKDMQEM 268 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.132 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,134,320 Number of extensions: 858263 Number of successful extensions: 2275 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 2279 Number of HSP's successfully gapped: 4 Length of query: 303 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 197 Effective length of database: 26,153,027 Effective search space: 5152146319 Effective search space used: 5152146319 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)