BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0553.0010.p
         (109 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0487 [R] COG2329 Uncharacterized enzyme involved in biosynthe...    71   4e-13
BH3293 [R] COG2329 Uncharacterized enzyme involved in biosynthes...    70   6e-13
BH3883 [R] COG2329 Uncharacterized enzyme involved in biosynthes...    70   6e-13
SA0160 [R] COG2329 Uncharacterized enzyme involved in biosynthes...    67   9e-12
DR0446 [R] COG2329 Uncharacterized enzyme involved in biosynthes...    57   8e-09

>lin0487 [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
           extracellular polysaccharides
          Length = 64

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 0/116 (0%), Positives = 0/116 (0%), Gaps = 15/116 (12%)

Query: 7   MLVVTNTLKIKEGHAEAIAQRFGASNG-------VQDMPGFVRMEVWHGSPKD-GAEELK 58
           M           G      +               +   G    E      K        
Sbjct: 1   MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNG 60

Query: 59  ICTVWENEEAFKGWTSSDAFRQSH-RGAGGNE------AILGATLDKYELLVSRTP 107
                                                                   
Sbjct: 61                                                           116


>BH3293 [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
           extracellular polysaccharides
          Length = 116

 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 54/101 (53%)

Query: 7   MLVVTNTLKIKEGHAEAIAQRFGASNGVQDMPGFVRMEVWHGSPKDGAEELKICTVWENE 66
           M++VTNT KI +G+ E + +RF     V+ M GF+ +EV         +E+ + T W  +
Sbjct: 1   MVIVTNTSKITKGNGEKLIERFNKVGKVEFMEGFLGLEVLLTENTKDFDEVTVVTRWNTK 60

Query: 67  EAFKGWTSSDAFRQSHRGAGGNEAILGATLDKYELLVSRTP 107
           + FK WT S AFR +H      E IL   +  YE+ V R P
Sbjct: 61  DDFKNWTKSSAFRDAHSKREVPEYILENKISFYEVKVVRGP 101


>BH3883 [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
           extracellular polysaccharides
          Length = 102

 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 7   MLVVTNTLKIKEGHAEAIAQRFGASNGVQDMPGFVRMEVWHGSPKDGAEELKICTVWENE 66
           M     TL+++EGH++ I ++F +   +++ PGF+ M +     + G EE+ +   WE+E
Sbjct: 1   MFFQVKTLRVEEGHSDKIVEKFASKGLIEEQPGFIDMNILRKKQRRGDEEVVVIIRWESE 60

Query: 67  EAFKGWTSSDAFRQSH---RGAGGNEAILGATLDKYELLVSR 105
           EA+K W  SDA    H   RG      IL    D YE+L  +
Sbjct: 61  EAWKAWEKSDAHLAGHRENRGIPKPSYILDGRQDVYEVLAKK 102


>SA0160 [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
           extracellular polysaccharides
          Length = 108

 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 7/102 (6%)

Query: 7   MLVVTNTLKIKEGHAEAIAQRFGASNGVQDMPGFVRMEVWHGSPKDGAEELKICTVWENE 66
           M +  N L++++G AE   +RF    G++ + GF +M V      +  +E+KI T+WE+E
Sbjct: 1   MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESE 60

Query: 67  EAFKGWTSSDAFRQSHRGA-------GGNEAILGATLDKYEL 101
           ++F  W +SD F+++H+         G    IL   + KY++
Sbjct: 61  DSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDI 102


>DR0446 [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
           extracellular polysaccharides
          Length = 103

 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 7   MLVVTNTLKIKEGHAEAIAQRFGASNGVQD-MPGFVRMEVWHGSPKDGAEELKICTVWEN 65
           M+ V N + +K   A    + F    G+ D MPGF+R EV    P    +   + T W++
Sbjct: 1   MITVMNRIGVKPEFAAQFEESFRNRAGLVDGMPGFIRNEVL--KPTKPGDPYIVLTYWQD 58

Query: 66  EEAFKGWTSSDAFRQSHRGAGG--NEAILG-ATLDKYELLVS 104
           E +F+ WT SD F+Q H  +G   ++A  G   L+ +++L+S
Sbjct: 59  EPSFRAWTESDEFKQGHARSGSLPHDAFTGRPVLEVHDVLLS 100


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,701,759
Number of extensions: 287517
Number of successful extensions: 1352
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1352
Number of HSP's successfully gapped: 9
Length of query: 109
Length of database: 38,378,431
Length adjustment: 77
Effective length of query: 32
Effective length of database: 29,497,713
Effective search space: 943926816
Effective search space used: 943926816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 109 (46.6 bits)