BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0553.0007.p
         (136 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC2634 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins               98   3e-21
lin1791 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins               90   1e-18
SA1678 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins                89   2e-18
BH0951 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins                84   8e-17
aq_1207 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins               83   1e-16

>CAC2634 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins
          Length = 138

 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 71/132 (53%)

Query: 1   MIKMKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQM 60
           + K K L LT QR AVY  ++S+H+HP+A  +   +      ++  TVY +L+ L++  +
Sbjct: 7   IFKEKKLKLTPQRIAVYKYLKSTHEHPSAETIYKAIQSDYPTMSLATVYKALKTLAEVHL 66

Query: 61  IRELKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVV 120
           I+EL +GE   RYDA    H HI C  CG VD++M          VS  T Y +    + 
Sbjct: 67  IQELNVGEGNFRYDANSSSHPHIQCLSCGKVDDIMGITFDNLNKDVSSHTDYDVISNKLY 126

Query: 121 FGGVCPNCRSKG 132
           F G+C +C+ K 
Sbjct: 127 FYGICKDCKDKA 138


>lin1791 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins
          Length = 148

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 69/131 (52%)

Query: 1   MIKMKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQM 60
           ++K   + +T QR A+ + + +SH HPTA ++   L     N++  TVYN+LR   D  +
Sbjct: 14  VLKKTGVRITPQRHAILEFLINSHTHPTADDIYRSLEGNFPNMSVATVYNNLRVFRDAGL 73

Query: 61  IRELKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVV 120
           I+EL  G+A+SR+D     H H +C VCG + +       E     +  TGY I +  + 
Sbjct: 74  IKELSYGDASSRFDFSTSNHYHAICNVCGKIVDFHYPGLDEVEHFAAHVTGYEIDNHRLE 133

Query: 121 FGGVCPNCRSK 131
             G CP C+ K
Sbjct: 134 VYGTCPECKEK 144


>SA1678 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins
          Length = 148

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 2   IKMKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQMI 61
           ++   + +T QRQA+   + SSH HPTA E+   L     N++  T+YN+LR   D  ++
Sbjct: 19  LRQAGIRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIV 78

Query: 62  RELKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQ--EWTDQVSEETGYLITHAHV 119
           +EL  G+++SR+D     H HI+CE CG +  V  Q PQ  E        T + +TH  +
Sbjct: 79  KELTYGDSSSRFDFNTHNHYHIICEQCGKI--VDFQYPQLNEIERLAQHMTDFDVTHHRM 136

Query: 120 VFGGVCPNCRSK 131
              GVC  C+ K
Sbjct: 137 EIYGVCKECQDK 148


>BH0951 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins
          Length = 145

 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 70/130 (53%)

Query: 2   IKMKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQMI 61
           +K   + +T QR A+ + +  S  HPTA E+   L  +  N++  TVYN+LR   +  ++
Sbjct: 13  LKTTRVRMTPQRHAILEYLFESMTHPTADEIYKALEGRFPNMSVATVYNNLRVFKEAGIV 72

Query: 62  RELKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVVF 121
           +EL  G+++SR+D    +H H++CE CG + +       E        TG+ ++   +  
Sbjct: 73  KELTYGDSSSRFDCVTSDHYHVICEECGKIVDFHYPGLDEVETLAEHVTGFKVSSHRMEI 132

Query: 122 GGVCPNCRSK 131
            G+CP+C+ K
Sbjct: 133 YGICPDCQKK 142


>aq_1207 [P] COG0735 Fe2+/Zn2+ uptake regulation proteins
          Length = 144

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 11/129 (8%)

Query: 7   LNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQMIRELKL 66
           L +T QR AVY+++  S +HPT  E+   + +    ++  TVY +L  L +  +++++  
Sbjct: 20  LKITPQRMAVYEVLLKSDNHPTVEEIYEEVKKLYPYVSLATVYRTLETLENIGLVKKVCF 79

Query: 67  GEAASRYDARLDEHQHILCEVCGAVDEV----MTQVPQEWTDQVSEETGYLITHAHVVFG 122
              ++RYDA L+EH H++CE CG ++++       +P+E+        GY      V   
Sbjct: 80  WGNSARYDANLEEHHHLICEKCGKIEDIKLDQKLNIPEEF-------YGYKTESYSVNVY 132

Query: 123 GVCPNCRSK 131
           G+CP+CR+K
Sbjct: 133 GICPDCRAK 141


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,235,082
Number of extensions: 284545
Number of successful extensions: 1564
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 1891
Number of HSP's successfully gapped: 34
Length of query: 136
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 41
Effective length of database: 27,421,701
Effective search space: 1124289741
Effective search space used: 1124289741
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)