BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0553.0006.p (660 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein 341 2e-93 BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein 338 1e-92 BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein 329 9e-90 BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein 291 2e-78 BH2275 [NT] COG0840 Methyl-accepting chemotaxis protein 220 6e-57 >BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 661 Score = 341 bits (875), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 216/662 (32%), Positives = 351/662 (53%), Gaps = 25/662 (3%) Query: 8 TIRMKLILTYLVVLLVPSIIIGWQTYESASSKVEGQLLXXXXXXXXXXXXIINVNMQSKI 67 +I KL++++L +L++P +I+ Y+SASS ++ Q++ IIN ++ K Sbjct: 12 SITRKLLVSFLSILIIPVVILAIFAYQSASSSLDRQMMGSALENVQQLNEIINTSIGEKE 71 Query: 68 NDIQYFAQQFSSSXXXXXXXXXXXXXXXRLKEYAALHPDVLDIYVATSRAEMVHASESKL 127 N YF++ + + +Y +++ DV IY + ++ + + Sbjct: 72 NSADYFSEWLTKEKYNAKSNASIRE---KFSQYISINKDVESIYTSDTKGHFTRYPDLPM 128 Query: 128 PEGYDPRKENAYVSALKHGKGAVISPAFQTVNGET-AVAVSAVLEDGGGVVXXXXX-XXX 185 P GY+P + + Y A+ + VI+ ++T + T V ++ +DG GV+ Sbjct: 129 PSGYNPVERDWYKKAVANKGKVVITDPYKTASTNTMVVTIAQQTKDGSGVIAINMTIENL 188 Query: 186 XXXXXXXKVGKEGYIFLADSSKKFLVHPIEPIGQESSLDFIKQMFNGEHGSFDYTYNNSR 245 +G +GY F+ KK + HP E G E D++ +M + + G F YT + + Sbjct: 189 LKTTKKVNIGTQGYAFIMTKDKKVVAHPNEQSGTELKGDWLDKMLSADKGDFQYTMDGDK 248 Query: 246 QKLTYLMNGLTGWRIGGTISKSEVTAATQGIRDTXXXXXXXXXXXXXXXXYFNVASILKP 305 +K+ + N LTGW+IGGT+ E+ A Q + + SI P Sbjct: 249 KKMAFDTNKLTGWKIGGTMYLDEIHEAAQPVLHLALIVLAAAIIIGIIVMTLIIRSITTP 308 Query: 306 LTRLRKATEVIASGDLSEDIGRFRRDEIGFLADNFRSMVANLRGMITGVKEMTGNVSASA 365 L +L +++ I+ GDL+E I +DE+G L +F +M ++LR +I +++ NV+AS+ Sbjct: 309 LKQLVGSSKRISEGDLTETIDIRSKDELGELGKSFNNMASSLRSLIHAIQDSVDNVAASS 368 Query: 366 EELTAGAEQTTKAIEHVTIAIQEVAAGTKRQVHSVQRGTESTAATAGEVEHISGF----- 420 EELTA A QT+KA EH+T+AI++ + G ++Q +++ TAA EHI Sbjct: 369 EELTASAAQTSKATEHITLAIEQFSNGNEKQNENIE-----TAA-----EHIYQMNDGLT 418 Query: 421 -MEQVSAMMEKTSLS----AAEGNDSVIRVVDKINGIHETVEELSSVIGKLNDRTGQIHG 475 M Q S ++ +S+ A+EG V + V ++N I ++V+E V+ L ++ I Sbjct: 419 NMAQASEVITDSSVQSTEIASEGGKLVHQTVGQMNVIDKSVKEAEQVVRGLETKSKDITN 478 Query: 476 IAGVITGIARQTNLLALNASIEAARAGEQGRGFAVVAAEVRKLAEESEGSAHRIADQIAS 535 I VI GIA QTNLLALNA+IEAARAGE GRGF+VVA EVRKLA +S SA I I Sbjct: 479 ILRVINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIIE 538 Query: 536 INTEMQQATATMEDARSKVSEGIMAVDTTGRSFSRIRRAVKGAAEKIEAMVEAVGTLTAE 595 I E+ + + +V G+ D T SF RI A +++ M V L+A Sbjct: 539 IVKEINTSLGMFQSVNQEVQTGLDITDKTEMSFKRISEMTNQIAGELQNMSATVQQLSAS 598 Query: 596 AVSMEAAIHEIQAISQEAAGNTETISAAAREQLASVEEIASSSADLSHLAEELQELVGRF 655 + + A I +IS+E++ + + I+A+A EQLAS+EEI+SS+ LS +AEEL+++ RF Sbjct: 599 SEEVSGASEHIASISKESSAHIQDIAASAEEQLASMEEISSSAETLSSMAEELRDMTKRF 658 Query: 656 KL 657 K+ Sbjct: 659 KI 660 >BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 662 Score = 338 bits (868), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 217/656 (33%), Positives = 354/656 (53%), Gaps = 12/656 (1%) Query: 8 TIRMKLILTYLVVLLVPSIIIGWQTYESASSKVEGQLLXXXXXXXXXXXXIINVNMQSKI 67 +I KLI++++ +L++P +I+ + +Y SAS K++ +++ + ++ K Sbjct: 12 SISKKLIVSFIAILIIPILILEFSSYRSASGKLDQEIMGNAKNSVDTFNTTVTNDLGEKA 71 Query: 68 NDIQYFAQQFSSSXXXXXXXXXXXXXXXRLKEYAALHPDVLDIYVATSRAEMVHASESKL 127 + +F++ S + +Y +++ V IY V A + KL Sbjct: 72 KAVTFFSESLKRSAFKGKSNQEEIKA--KFSQYVSINQGVARIYGGADNGTYVQAPKEKL 129 Query: 128 PEGYDPRKENAYVSALKHGKGAVIS-PAFQTVNGETAVAVSAVLEDGGGVVXXXXXXXXX 186 PEGYDPR+ Y A+K G V++ P +G + ++ L+DG GVV Sbjct: 130 PEGYDPRQRPWYQDAMKAGGEIVVTDPYVAASDGSMVITIAQELKDGSGVVAMDITIDKL 189 Query: 187 XXXXXX-KVGKEGYIFLADSSKKFLVHPIEPIGQESSLDFIKQMFNGEHGSFDYTYNNSR 245 KVGKEGY F+A +K ++ H G++ S D++ +M+ + G YT NN Sbjct: 190 LEQMKQIKVGKEGYAFIATKNKTYVAHKNHKAGEKLSGDWVAKMYANDSGELQYTLNNED 249 Query: 246 QKLTYLMNGLTGWRIGGTISKSEVTAATQGIRDTXXXXXXXXXXXXXXXXYFNVASILKP 305 +K+TY N LTGW+I GT+ E+ A++ + T F V SI KP Sbjct: 250 KKMTYTTNELTGWKIAGTMYMDEIKDASKSVLTTGMIVLIASIVAGGILILFIVRSITKP 309 Query: 306 LTRLRKATEVIASGDLSEDIGRFRRDEIGFLADNFRSMVANLRGMITGVKEMTGNVSASA 365 L RL ++++ I+ GDL+E I +DE+G L ++F M +LR +I+ ++ NV+AS+ Sbjct: 310 LKRLVQSSKTISRGDLTETIEIHSKDELGELGESFNEMGQSLRSLISAIQNSVNNVAASS 369 Query: 366 EELTAGAEQTTKAIEHVTIAIQEVAAGTKRQVHSVQRGTESTAATAGEVEHISGFMEQVS 425 E+LTA A QT+KA EH+T+AI++ + G + Q V+ + ++ +S Q S Sbjct: 370 EQLTASAGQTSKATEHITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQQVS----QTS 425 Query: 426 AMMEKTSLSAAE----GNDSVIRVVDKINGIHETVEELSSVIGKLNDRTGQIHGIAGVIT 481 + + K S+ + E G V + ++N I+++V++ +V+ L ++ I I VI Sbjct: 426 SDITKASIQSTEIAGTGEKFVQQTGGQMNSINQSVQQAEAVVKGLEGKSKDITSILRVIN 485 Query: 482 GIARQTNLLALNASIEAARAGEQGRGFAVVAAEVRKLAEESEGSAHRIADQIASINTEMQ 541 GIA QTNLLALNA+IEAARAGE GRGF+VVA EVRKLA +S SA I I I E+ Sbjct: 486 GIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKLIQEIVAEID 545 Query: 542 QATATMEDARSKVSEGIMAVDTTGRSFSRIRRAVKGAAEKIEAMVEAVGTLTAEAVSMEA 601 + ++ +V G++ D T SF I A K++ M V L+ + + A Sbjct: 546 TSLHMFKEVNQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNSTVEQLSDRSQHVSA 605 Query: 602 AIHEIQAISQEAAGNTETISAAAREQLASVEEIASSSADLSHLAEELQELVGRFKL 657 A+ I +S+E++ + + I+A+A EQLAS+EEI+SS+ L+ +AEEL++L +FK+ Sbjct: 606 AVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEELRDLTKQFKI 661 >BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 329 bits (843), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 0/662 (0%), Positives = 0/662 (0%), Gaps = 25/662 (3%) Query: 8 TIRMKLILTYLVVLLVPSIIIGWQTYESASSKVEGQLLXXXXXXXXXXXXIINVNMQSKI 67 + + +V + I + E++ G+ I Sbjct: 12 NPDDRSDNVEKLQDMVQNTIENIEEAEASMEFASGEDKQRIKEKNARREQSIEAFRNEIQ 71 Query: 68 NDIQYFAQQFSSSXXXXXXXXXXXXXXXRLKEYAALHPDVLDIYVATSRAEMVHASESKL 127 Sbjct: 72 --- 128 Query: 128 PEGYDPRKENAYVSALKHGKGAVIS-PAFQTVNGETAVAVSAVLEDGGGVVXXXXXXXXX 186 Sbjct: 129 188 Query: 187 XXXXXX-KVGKEGYIFLADSSKKFLVHPIEPIGQESSLDFIKQMFNGEHGSFDYTYNNSR 245 Sbjct: 189 248 Query: 246 QKLTYLMNGLTGWRIGGTISKSEVTAATQGIRDTXXXXXXXXXXXXXXXXYFNVASILKP 305 Sbjct: 249 308 Query: 306 LTRLRKATEVIASGDLSEDIGRFRRDEIGFLADNFRSMVANLRGMITGVKEMTGNVSASA 365 Sbjct: 309 368 Query: 366 EELTAGAEQTTKAIEHVTIAIQEVAAGTKRQVHSVQRGTESTAATAGEVEHISGFME--- 422 Sbjct: 369 ---------- 418 Query: 423 ---QVSAMMEKTSLSAAE----GNDSVIRVVDKINGIHETVEELSSVIGKLNDRTGQIHG 475 Sbjct: 419 478 Query: 476 IAGVITGIARQTNLLALNASIEAARAGEQGRGFAVVAAEVRKLAEESEGSAHRIADQIAS 535 Sbjct: 479 538 Query: 536 INTEMQQATATMEDARSKVSEGIMAVDTTGRSFSRIRRAVKGAAEKIEAMVEAVGTLTAE 595 Sbjct: 539 598 Query: 596 AVSMEAAIHEIQAISQEAAGNTETISAAAREQLASVEEIASSSADLSHLAEELQELVGRF 655 Sbjct: 599 658 Query: 656 KL 657 Sbjct: 659 660 >BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 291 bits (746), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 0/641 (0%), Positives = 0/641 (0%), Gaps = 13/641 (2%) Query: 23 VPSIIIGWQTYESASSKVEGQLLXXXXXXXXXXXXIINVNMQSKINDIQYFAQQFSSSXX 82 V + I + E++ G+ I ++ Sbjct: 27 VQNTIENIEEAEASMEFASGEDKQRIKEKNARREQSIEAFRNEIQDESAARQNG---YRS 83 Query: 83 XXXXXXXXXXXXXRLKEYAALHPDVLDIYVATSRAEMVHASESKLPEGYDPRKENAYVSA 142 Sbjct: 84 143 Query: 143 LKH-GKGAVISPAFQTVNGETAVAVSAVLEDGGGVVXXXXXXXXXXXXXX-XKVGKEGYI 200 Sbjct: 144 203 Query: 201 FLADSSKKFLVHPIEPIGQESSLDFIKQMFNGEHGSFDYTYNNSRQKLTYLMNGLTGWRI 260 Sbjct: 204 263 Query: 261 GGTISKSEVTAATQGIRDTXXXXXXXXXXXXXXXXYFNVASILKPLTRLRKATEVIASGD 320 Sbjct: 264 323 Query: 321 LSEDIGRFRRDEIGFLADNFRSMVANLRGMITGVKEMTGNVSASAEELTAGAEQTTKAIE 380 Sbjct: 324 383 Query: 381 HVTIAIQEVAAGTKRQVHSVQRGTESTAATAGEVEHISGFMEQVSAMMEKTSLSAAE--- 437 Sbjct: 384 ---- 439 Query: 438 -GNDSVIRVVDKINGIHETVEELSSVIGKLNDRTGQIHGIAGVITGIARQTNLLALNASI 496 Sbjct: 440 499 Query: 497 EAARAGEQGRGFAVVAAEVRKLAEESEGSAHRIADQIASINTEMQQATATMEDARSKVSE 556 Sbjct: 500 559 Query: 557 GIMAVDTTGRSFSRIRRAVKGAAEKIEAMVEAVGTLTAEAVSMEAAIHEIQAISQEAAGN 616 Sbjct: 560 619 Query: 617 TETISAAAREQLASVEEIASSSADLSHLAEELQELVGRFKL 657 Sbjct: 620 660 >BH2275 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 671 Score = 220 bits (560), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 181/665 (27%), Positives = 307/665 (46%), Gaps = 21/665 (3%) Query: 8 TIRMKLILTYLVVLLVPSIIIGWQTYESASSKVEGQLLXXXXXXXXXXXXIINVNMQSKI 67 +I+ KL + + + LL+ + + TY S +E Q+ +Q + Sbjct: 5 SIQKKLTVLFSMTLLMVLMAVSLITYMQMSRSIERQVENEAVTVLQEVSRYTERYIQEHV 64 Query: 68 NDIQYFAQQ-----FSSSXXXXXXXXXXXXXXXRLKEYAALHPDVLDIYVATSRAEMVHA 122 + +Q A + + +L Y LHP++ YVAT + Sbjct: 65 HQLQLLANDPRTLTYVNEQIDAGSSDVSGEVLGQLAGYGQLHPNIQLSYVATEGRTIETV 124 Query: 123 SESKLPEGYDPRKENAYVSALKHGKGAV-ISPAFQTVNGETAVAVS-AVLEDGG---GVV 177 LP+ +DP Y A+ V SP +GE + V+ A+L++ G GV Sbjct: 125 PTVDLPDDFDPTTRPWYELAMASPTEVVWTSPYVSIEDGEIVMTVAKAILDERGQAQGVA 184 Query: 178 XXXXXXXXXXXXX-XXKVGKEGYIFLADSSKKFLVHPIEPIGQESSLD-----FIKQMFN 231 ++ +G IFL D +VHP +G+ + D I+ + Sbjct: 185 GIDMTLNDFSDILGSIEMNYDGAIFLFDREGTAIVHPT-LLGETVTEDELYGQVIQATSD 243 Query: 232 GEHGSFDYTYNNSRQKLTYLMNGLTGWRIGGTISKSEVTAATQGIRDTXXXXXXXXXXXX 291 E+G D L + LTGW +G + + +R+ Sbjct: 244 SENGRTD----GESTILFFQTVPLTGWIVGMEFERDNMLKDVNTVRNGIILVSVIALIVG 299 Query: 292 XXXXYFNVASILKPLTRLRKATEVIASGDLSEDIGRFRRDEIGFLADNFRSMVANLRGMI 351 SI KP++RL +ASGDL+ D+ DE+G L ++F+ M+ LRG+I Sbjct: 300 MMIVILVARSITKPISRLGTHVGTVASGDLTVDVRAAGNDEVGQLTESFKEMLVQLRGII 359 Query: 352 TGVKEMTGNVSASAEELTAGAEQTTKAIEHVTIAIQEVAAGTKRQVHSVQRGTESTAATA 411 T VK T +V +A+ LTA +E+T + E + +A+++VA G+ +QV + A Sbjct: 360 TTVKGSTAHVQEAADHLTAISEETIASSEEIALAVRDVAIGSTKQVEHLDEAKRQIDQLA 419 Query: 412 GEVEHISGFMEQVSAMMEKTSLSAAEGNDSVIRVVDKINGIHETVEELSSVIGKLNDRTG 471 ++E +S M +V ++ +T L+ G++ V + K + +++ + KL+D Sbjct: 420 RQMEQMSLSMTEVGSLSNETRLAGQSGSEKVQHLKTKTLEANTVFDQMEDGLLKLSDHIM 479 Query: 472 QIHGIAGVITGIARQTNLLALNASIEAARAGEQGRGFAVVAAEVRKLAEESEGSAHRIAD 531 +I+ + I ++ QTNLLALNASIEAARAGE G+GFAVVA EVR+LAE+S R+ D Sbjct: 480 EINEVIHTINHLSEQTNLLALNASIEAARAGEHGKGFAVVANEVRRLAEQSSHETVRVGD 539 Query: 532 QIASINTEMQQATATMEDARSKVSEGIMAVDTTGRSFSRIRRAVKGAAEKIEAMVEAVGT 591 I I +Q M+ ARS +SE +VD T +F + +K E + ++ E GT Sbjct: 540 TITGIVNRSKQVIVDMKQARSILSEQSDSVDETENTFLHMASLIKQMNETLASVQEDFGT 599 Query: 592 LTAEAVSMEAAIHEIQAISQEAAGNTETISAAAREQLASVEEIASSSADLSHLAEELQEL 651 L + I + ++++AA +E ++A+ EQ+ +++ I ++ L + EL + Sbjct: 600 LAEQNSQFVKRIEAVVEVAEQAAATSEEVNASTDEQVTALQRITEAAEQLQEASHELNQS 659 Query: 652 VGRFK 656 V +F+ Sbjct: 660 VRQFQ 664 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 37,567,297 Number of extensions: 1318362 Number of successful extensions: 7069 Number of sequences better than 1.0e-05: 806 Number of HSP's gapped: 4348 Number of HSP's successfully gapped: 812 Length of query: 660 Length of database: 38,378,431 Length adjustment: 113 Effective length of query: 547 Effective length of database: 25,345,689 Effective search space: 13864091883 Effective search space used: 13864091883 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 119 (50.4 bits)