BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0551.0005.p (409 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cj0035c [GEPR] COG0477 Permeases of the major facilitator superf... 206 6e-53 mll1470 [GEPR] COG0477 Permeases of the major facilitator superf... 187 3e-47 bcr [GEPR] COG0477 Permeases of the major facilitator superfamily 155 1e-37 PM1533 [GEPR] COG0477 Permeases of the major facilitator superfa... 151 2e-36 RSc0216 [GEPR] COG0477 Permeases of the major facilitator superf... 150 5e-36 >Cj0035c [GEPR] COG0477 Permeases of the major facilitator superfamily Length = 400 Score = 206 bits (524), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 103/273 (37%), Positives = 151/273 (55%) Query: 20 RLQIAVILGAISAIGPLSIDMYXXXXXXXXXXXXXXXXXVQLSLTFFLLGLASGQLVAGP 79 + ++ VIL +S+I PLS DMY QLS+ F + A GQL+ GP Sbjct: 12 KFKLIVILALMSSIAPLSTDMYLPALSHVEQSFQTNSFLTQLSIASFFIAFALGQLIYGP 71 Query: 80 LSDVYGRRTPLLIGMLVYAVSSLLCAFTPSIGLLVMLRFIQGLAGSVGVVISRAAVRDLY 139 LSD++GR+ P L+G+ + VSSL C I + LRF + L G GVVI+RA V DL+ Sbjct: 72 LSDIFGRKIPALVGIFFFIVSSLFCVIIDDIYAFIALRFFEALGGCAGVVIARAIVNDLF 131 Query: 140 SGSELTKFFSLLMIVNGLGPILAPVIGGQLLRVTTWQGVFMVLFAAGLIFFVTILLRLPE 199 E F+L+M+ + L P+L+P GG LL +W +F LFA G++ F+ IL L E Sbjct: 132 EIKEAAGIFALMMVFSSLAPMLSPTFGGILLEYFSWHSIFATLFALGILLFLMILFGLKE 191 Query: 200 TLPKERRLKSGIRGTLRTFAVLLGNGRFMGYALSQGFVSAAMFAYISGSSFVLQNIFGVS 259 + P + K ++++ +L + RF+ Y L F AAMFAYI+GSSFV F +S Sbjct: 192 SAPHLKNKKFSHHEAMKSYKFVLSDKRFLVYILCASFALAAMFAYITGSSFVFTQFFSLS 251 Query: 260 PQMYSVIFAVNGLGIILSGQIAGRLAGRIGEQK 292 Q ++++F N LG ++ I RL + +K Sbjct: 252 EQKFALLFGANALGFVICANINARLVLKYESEK 284 >mll1470 [GEPR] COG0477 Permeases of the major facilitator superfamily Length = 297 Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 8/272 (2%), Positives = 49/272 (18%) Query: 21 LQIAVILGAISAIGPLSIDMYXXXXXXXXXXXXXXXXXVQLSLTFFLLGLASGQLVAGPL 80 + + + + ++ + + + Sbjct: 6 CHLFSAINSSPFKIAPEKEQDLKTIVDDKKIIISVVSEPGFNIRVRKNESNNSHEIVLTV 65 Query: 81 SDVYGRRTPLLIGMLVYAVSSLLCAFTPSIGLLVMLRFIQGLAGSVGVVISRAAVRDLYS 140 + + + S L ++ + S Sbjct: 66 ASLEYIWAFSNFFWVFTQEYSKSQKNNDEHFDLTGKNRLKKSDELLKWARKNLQTTGCES 125 Query: 141 GSELTKFFSLLMIVNGLGPILAPVIGGQLLRVTTWQGVFMVLFAAGLIFFVTILLRLPET 200 + + + + + + + + + +VL + + Sbjct: 126 WPKKCPKPEAYLQGSEDSQVASEIFLCAIAWILHHEISHVVLQHPLVTTAFSTQEEREAD 185 Query: 201 LPKERRLKSGIRGTLRTFAVLLGNGRFMGYALSQGFVSAAMFAYISGSSFVLQNIFGVSP 260 + + + + + V + + + +S Sbjct: 186 SHATKWILGNLYESAPELKKRALGIATAVLCIQSLEVENYFCLQNTHPAAYERIYSNISC 245 Query: 261 QMYSVIFAVNGLGIILSGQIAGRLAGRIGEQK 292 + L ++ + + Sbjct: 246 YPVGNEELIEALCTVMLQYLFHGKNINVNLDG 277 >bcr [GEPR] COG0477 Permeases of the major facilitator superfamily Length = 396 Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 149/273 (54%) Query: 17 RKQRLQIAVILGAISAIGPLSIDMYXXXXXXXXXXXXXXXXXVQLSLTFFLLGLASGQLV 76 + I ILG ++ + PLSIDMY Q++L+ ++LG A GQL+ Sbjct: 5 QHSSFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPAGSTQMTLSTYILGFALGQLI 64 Query: 77 AGPLSDVYGRRTPLLIGMLVYAVSSLLCAFTPSIGLLVMLRFIQGLAGSVGVVISRAAVR 136 GP++D +GR+ +L G LV+A +++ CA +I L+++RF GLA + V+ A +R Sbjct: 65 YGPMADSFGRKPVVLGGTLVFAAAAVACALANTIDQLIVMRFFHGLAAAAASVVINALMR 124 Query: 137 DLYSGSELTKFFSLLMIVNGLGPILAPVIGGQLLRVTTWQGVFMVLFAAGLIFFVTILLR 196 D+Y E ++ S +M+V + P++AP++GG +L +W +F +L A ++ I Sbjct: 125 DIYPKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVWLSWHYIFWILALAAILASAMIFFL 184 Query: 197 LPETLPKERRLKSGIRGTLRTFAVLLGNGRFMGYALSQGFVSAAMFAYISGSSFVLQNIF 256 + ETLP ERR IR T+ FA L + R + Y L+ GF A MF+++S FV I Sbjct: 185 IKETLPPERRQPFHIRTTIGNFAALFRHKRVLSYMLASGFSFAGMFSFLSAGPFVYIEIN 244 Query: 257 GVSPQMYSVIFAVNGLGIILSGQIAGRLAGRIG 289 V+P+ + FA+N + + + R RIG Sbjct: 245 HVAPENFGYYFALNIVFLFVMTIFNSRFVRRIG 277 >PM1533 [GEPR] COG0477 Permeases of the major facilitator superfamily Length = 399 Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/273 (35%), Positives = 139/273 (50%), Gaps = 2/273 (0%) Query: 22 QIAVI--LGAISAIGPLSIDMYXXXXXXXXXXXXXXXXXVQLSLTFFLLGLASGQLVAGP 79 Q A+I LG + GPLSIDMY VQLS++ FL G G L GP Sbjct: 11 QTALICFLGTLVGFGPLSIDMYLPSLPTIAKALHTSIEWVQLSVSTFLTGFCVGMLFYGP 70 Query: 80 LSDVYGRRTPLLIGMLVYAVSSLLCAFTPSIGLLVMLRFIQGLAGSVGVVISRAAVRDLY 139 LSD YGRR LLIGM +Y V+S+ C+ SI L++ RF+Q G VG V+ RA VRD + Sbjct: 71 LSDKYGRRIILLIGMTIYIVASIACSIATSIEQLLVARFLQAFGGGVGPVLGRAIVRDSF 130 Query: 140 SGSELTKFFSLLMIVNGLGPILAPVIGGQLLRVTTWQGVFMVLFAAGLIFFVTILLRLPE 199 +T S++ +V L P+LAP IGG +L W+ F++L G++ ++ L E Sbjct: 131 PPQRITHVLSMMQLVTMLAPLLAPFIGGIVLLWFGWETQFLLLALIGVVCWLIAYFFLAE 190 Query: 200 TLPKERRLKSGIRGTLRTFAVLLGNGRFMGYALSQGFVSAAMFAYISGSSFVLQNIFGVS 259 T + + + + +L + G L + MFAY++G+ FV + F + Sbjct: 191 TNQDRHQRPLNLGTFFQAYCGILKQPQSFGNILCLSAMFGGMFAYVAGTPFVYIDYFHIP 250 Query: 260 PQMYSVIFAVNGLGIILSGQIAGRLAGRIGEQK 292 PQ Y F +N +GI+L+ I R Q+ Sbjct: 251 PQDYGFYFGINVVGIVLATLINNYCVKRYAVQR 283 >RSc0216 [GEPR] COG0477 Permeases of the major facilitator superfamily Length = 409 Score = 150 bits (378), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 141/279 (50%), Gaps = 1/279 (0%) Query: 15 PSRKQRLQIAVILGAISAIGPLSIDMYXXXXXXXXXXXXXXXXXVQLSLTFFLLGLASGQ 74 P + + L + +L + A +S D+Y ++ +++ +L+G + GQ Sbjct: 7 PPQDRSLWMLAVLSLLMAFASISTDLYLPAMPAMQATLGASAGALEWTISGYLVGFSLGQ 66 Query: 75 LVAGPLSDVYGRRTPLLIGMLVYAVSSLLCAFTPSIGLLVMLRFIQGLAGSVGVVISRAA 134 L+ GP+ D GRR P+ +G+L++ S CA S L+ R +Q VV++RA Sbjct: 67 LLWGPIGDRTGRRLPIALGLLLFIGGSAGCALAASAPALIAWRAVQAAGACASVVLARAM 126 Query: 135 VRDLYSGSELTKFFSLLMIVNGLGPILAPVIGGQLLRVTTWQGVFMVLFAAGLIFFVTIL 194 VRDLY G + S LM V + P++ P GG +L++ +W+ +F L GL + Sbjct: 127 VRDLYEGERAARMMSTLMTVMAIAPLVGPSAGGLILKLWSWRAIFWTLVIVGLATLAAV- 185 Query: 195 LRLPETLPKERRLKSGIRGTLRTFAVLLGNGRFMGYALSQGFVSAAMFAYISGSSFVLQN 254 LPETLP RR + + TL + VLL + R +GY GF M+AY++G+ F + Sbjct: 186 GTLPETLPAHRRNDAPLHRTLARYGVLLRHPRLLGYLGVGGFFYGGMYAYVAGTPFAYID 245 Query: 255 IFGVSPQMYSVIFAVNGLGIILSGQIAGRLAGRIGEQKF 293 + V Q Y ++F + +GI+ + + L GR G + Sbjct: 246 YYHVPAQHYGLLFGLGIVGIMATNLLNANLVGRFGGDRL 284 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.144 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,079,973 Number of extensions: 874860 Number of successful extensions: 3049 Number of sequences better than 1.0e-05: 103 Number of HSP's gapped: 3062 Number of HSP's successfully gapped: 104 Length of query: 409 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 300 Effective length of database: 25,807,025 Effective search space: 7742107500 Effective search space used: 7742107500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 117 (49.7 bits)