BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0551.0003.p
         (133 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ydfP [S] COG2259 Predicted membrane protein                         72   3e-13
PA2864 [S] COG2259 Predicted membrane protein                          62   2e-10
ML0956 [S] COG2259 Predicted membrane protein                          47   5e-06

>BS_ydfP [S] COG2259 Predicted membrane protein
          Length = 165

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 2/93 (2%), Positives = 9/93 (9%)

Query: 17  FIGHGSQKLFGWFGGYGPKGTGGWMESIGIKPGVLMAVMAGLMEXXXXXXXXXXXXTPXX 76
                S + +                +      ++        +                
Sbjct: 17  VGNVWSDRGWQKKWAERDAAALSQEVNAQFAARIIEQGRTIARDEAVKDAQQKSAEISAR 76

Query: 77  XXXXXXXXXXXXXKVHAPNGFWSTANGIEFPLT 109
                        +          A        
Sbjct: 77  AAYLSDSVNQLRAEAKKYAIRLDAAKHTADLAA 109


>PA2864 [S] COG2259 Predicted membrane protein
          Length = 144

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 44/109 (40%)

Query: 20  HGSQKLFGWFGGYGPKGTGGWMESIGIKPGVLMAVMAGLMEXXXXXXXXXXXXTPXXXXX 79
           HGSQKLFG FGG G  G   W ESIG+ PG L+A +AG  E                   
Sbjct: 31  HGSQKLFGMFGGAGLNGMAQWFESIGLTPGYLLATLAGSAEFFGGLALVIGLLVRPASVV 90

Query: 80  XXXXXXXXXXKVHAPNGFWSTANGIEFPLTXXXXXXXXXXXXXXSISLD 128
                      VH  NGF+ T NG E+ LT                SLD
Sbjct: 91  VGFTMIVAIFSVHIGNGFFITDNGYEYALTLLMISVALLIDGAGKFSLD 139


>ML0956 [S] COG2259 Predicted membrane protein
          Length = 169

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 41/114 (35%), Gaps = 3/114 (2%)

Query: 19  GHGSQKLFGWFGGYGPKGTGGWMESIGIKPGVLMAVMAGLMEXXXXXXXXXXXXTPXXXX 78
            HG  K F   GG  P GT  W ESIG+KPG   A +A   E            TP    
Sbjct: 21  AHGYNKFFC--GGRIP-GTARWFESIGMKPGTFHATVAATTEISAGLGLAAGLLTPIPAA 77

Query: 79  XXXXXXXXXXXKVHAPNGFWSTANGIEFPLTXXXXXXXXXXXXXXSISLDALLF 132
                       VH PNGF+    G E+ L                 SLD L+F
Sbjct: 78  GFVSLMMVAAWMVHRPNGFFIVKEGWEYNLVLATGAVVVATLGAGRFSLDWLIF 131


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.140    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,277,641
Number of extensions: 168080
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 3
Length of query: 133
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 38
Effective length of database: 27,421,701
Effective search space: 1042024638
Effective search space used: 1042024638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)