BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0035.p
         (157 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2249 [O] COG0225 Peptide methionine sulfoxide reductase             229   1e-60
BH1448 [O] COG0225 Peptide methionine sulfoxide reductase             218   4e-57
SA1257 [O] COG0225 Peptide methionine sulfoxide reductase             172   2e-43
SA1194 [O] COG0225 Peptide methionine sulfoxide reductase             167   8e-42
L67708 [O] COG0225 Peptide methionine sulfoxide reductase             157   6e-39

>BH2249 [O] COG0225 Peptide methionine sulfoxide reductase
          Length = 346

 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 6/157 (3%), Positives = 20/157 (12%)

Query: 1   MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60
           + T                   V                   +       +  + L +  
Sbjct: 18  LGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHG 77

Query: 61  WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120
             +            R            + + +              +           P
Sbjct: 78  SREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRP 137

Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157
                +  +            +  +         K  
Sbjct: 138 TNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIR 174


>BH1448 [O] COG0225 Peptide methionine sulfoxide reductase
          Length = 346

 Score =  218 bits (554), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 7/157 (4%), Positives = 20/157 (12%)

Query: 1   MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60
               F E        +       +      V                             
Sbjct: 19  GTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGS 78

Query: 61  WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120
             ++              +        + +    AL    +   +   +   V       
Sbjct: 79  REKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPT 138

Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157
             +    Y                  +         +
Sbjct: 139 NCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRY 175


>SA1257 [O] COG0225 Peptide methionine sulfoxide reductase
          Length = 346

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 4/157 (2%), Positives = 21/157 (13%)

Query: 1   MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60
           +          +     +A           +      +    +         Y       
Sbjct: 16  LGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAK 75

Query: 61  WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120
               +      +           +       R     +        + +   + ++    
Sbjct: 76  HGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQ 135

Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157
           R              +               +     
Sbjct: 136 RPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGK 172


>SA1194 [O] COG0225 Peptide methionine sulfoxide reductase
          Length = 346

 Score =  167 bits (422), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 4/145 (2%), Positives = 20/145 (13%)

Query: 1   MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60
           +          +     +A           +      +    +         Y       
Sbjct: 16  LGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAK 75

Query: 61  WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120
               +      +           +       R     +        + +   + ++    
Sbjct: 76  HGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQ 135

Query: 121 RFYRAEEYHQDYHKKNPKHYKEDRE 145
           R              +         
Sbjct: 136 RPTNCFGKLGYSWTDSAPAVSLLDT 160


>L67708 [O] COG0225 Peptide methionine sulfoxide reductase
          Length = 346

 Score =  157 bits (397), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 4/157 (2%), Positives = 21/157 (13%), Gaps = 2/157 (1%)

Query: 1   MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60
           +          +     +A           +      +    +         Y       
Sbjct: 16  LGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAK 75

Query: 61  WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120
               +      +           +       R     +        + +   + ++    
Sbjct: 76  HGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQ 135

Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157
           R              +                  +  
Sbjct: 136 RPTNCFGKLGYSWTDSAPAVSLLDTL--DALAEYQRA 170


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,976,713
Number of extensions: 508922
Number of successful extensions: 777
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 29
Length of query: 157
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 59
Effective length of database: 27,075,699
Effective search space: 1597466241
Effective search space used: 1597466241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)