BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0033.p
         (158 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0585 [P] COG4771 Outer membrane receptor for ferrienterocheli...    76   2e-14
TM0585 [R] COG0673 Predicted dehydrogenases and related proteins       76   2e-14
SSO3049 [R] COG0673 Predicted dehydrogenases and related proteins      66   2e-11
Cgl2503 [R] COG0673 Predicted dehydrogenases and related proteins      62   3e-10

>STM0585 [P] COG4771 Outer membrane receptor for ferrienterochelin and
           colicins
          Length = 751

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 7/161 (4%), Positives = 21/161 (13%), Gaps = 16/161 (9%)

Query: 1   VLINQTIHTLDLLQWF-GGEIASVTGSVTTDVLNEVIEVEDTAHACIIFKNNVRGLFYGT 59
                                +        D    +    D   A     N         
Sbjct: 183 WNTYFNAPEHKDEGATKRTNFSLNGPLGG-DFSFRLYGNLDKTQADARNINQGHQSERTG 241

Query: 60  -NAYCVNSPVEMEFVFEQGTLLL---RRDCLYLWK----DGHETLLTEPVSTAGEGKSYW 111
             A  + +  E     +   ++            +              +       +  
Sbjct: 242 SYADTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYSRQG------NLYAGDTQNTNT 295

Query: 112 GTSHQRLILDFYKHVREGRKFWIDAGEGIKALEVIAGIYST 152
               +         +          G     +     +   
Sbjct: 296 NQLVKDNYGKETNRLYRQNYSLTWNGGWNNGVTTSNWVQYE 336


>TM0585 [R] COG0673 Predicted dehydrogenases and related proteins
          Length = 360

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 16/161 (9%)

Query: 1   VLINQTIHTLDLLQWF-GGEIASVTGSVTTDVLNEVIEVEDTAHACIIFKNNVRGLFYGT 59
           VL+NQ+ H +DLLQWF GGEI  + G +  +  +  IE ED   A + FK    GL   T
Sbjct: 183 VLMNQSTHAIDLLQWFLGGEIEEIYGHIA-NTNHPYIEAEDEGFAIVKFKGGKTGLIEAT 241

Query: 60  -NAYCVNSPVEMEFVFEQGTLLL---RRDCLYLWK----DGHETLLTEPVSTAGEGKSYW 111
            N +  N    +    E+GT+++     + +  W+    +GH      P     +  + +
Sbjct: 242 SNVFPRNLEETLAIFGEKGTVVIGGIAVNRILTWRFEGEEGH------PFMNLPDPDTVY 295

Query: 112 GTSHQRLILDFYKHVREGRKFWIDAGEGIKALEVIAGIYST 152
           G SH+ +  DFY+ V   RK +I   +G KA+E++ GIY +
Sbjct: 296 GDSHKYVYRDFYEAVTNDRKPYISGEDGKKAVEIVLGIYRS 336


>SSO3049 [R] COG0673 Predicted dehydrogenases and related proteins
          Length = 371

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 30/171 (17%)

Query: 1   VLINQTIHTLDLLQWFGGEIASVTGSVTTDVLNEVIEVEDTAHACIIFKNNVRGLFYGTN 60
           V+ NQ IHT+DL+ W  GE+  V+G V  ++ ++ IEVEDTA A + +KN   G      
Sbjct: 201 VMTNQGIHTIDLMIWLNGEVEEVSGFV-DNLTHDGIEVEDTAVAIMRYKNGALG------ 253

Query: 61  AYCVNSPVEMEFVFEQGTLLLRRDCLYLWKDGHETLLTEPVST-AGEGK----------- 108
              ++  V M     + T    R       +G   +    +ST A EGK           
Sbjct: 254 --TISQTVSM-----KPTTYQYRKIRVNGSNGFVEITDGSLSTVAIEGKIEESKSSVEYK 306

Query: 109 ----SYWGTSHQRLILDFYKHVREGRKFWIDAGEGIKALEVIAGIYSTAVN 155
               +  G  H+ L+ DF + + E   F I+  EG+K+LEVI  +Y ++VN
Sbjct: 307 KETIAQPGNLHKELLRDFLRALSEDNDFPINGKEGMKSLEVIKAVYLSSVN 357


>Cgl2503 [R] COG0673 Predicted dehydrogenases and related proteins
          Length = 224

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 1   VLINQTIHTLDLLQWFGGEIASVTGSVTTDVLNEVIEVEDTAHACIIFKNNVR 53
           +L+NQ IHTLDLLQWF G+   V G+V+TD   +VI+VEDTAHA I  ++ V 
Sbjct: 167 LLMNQAIHTLDLLQWFLGKATEVKGTVSTDKYADVIDVEDTAHAYIGHESGVH 219


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,945,122
Number of extensions: 523868
Number of successful extensions: 729
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 725
Number of HSP's successfully gapped: 4
Length of query: 158
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 60
Effective length of database: 27,075,699
Effective search space: 1624541940
Effective search space used: 1624541940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)