BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0027.p (274 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0989 [K] COG2207 AraC-type DNA-binding domain-containing proteins 67 4e-11 lin1114_2 [K] COG2207 AraC-type DNA-binding domain-containing pr... 63 5e-10 STM0104 [K] COG2207 AraC-type DNA-binding domain-containing prot... 62 1e-09 SMa1749 [K] COG2207 AraC-type DNA-binding domain-containing prot... 60 3e-09 lin2345 [F] COG2169 Adenosine deaminase 54 3e-07 >BH0989 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 278 Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 103/252 (40%), Gaps = 28/252 (11%) Query: 29 GWNRTNETPSFNRLYFIDRGEGKVIINGVAYYPRPGQLMIMPAGSTQTTETSPDNPYARY 88 G R TP L+ + +GE + NG AY+ PG+++ G P A Sbjct: 34 GHTRAYPTPKSGFLFAL-KGEASFVFNGTAYHLSPGKVV---HGGKNMELIVKVGPAAFE 89 Query: 89 FCHFDAHIGEWPLFHSANKLYISDA---ADPDGVRAVFTEMISLFQDDSFLSKIRXXXXX 145 +C + + L +N +D+ +P G TE + L R Sbjct: 90 YC-----LIHYTLHTRSNHPNDTDSHFLLEP-GENLAITEKLDLLH--------RIKSTP 135 Query: 146 XXXXXXXXXXXXYSDFIDEL------LHSSDQRKLAHVLEYIDQRLMRPXXXXXXXXXXX 199 Y+ F D L L+ Q + V+EYI M P Sbjct: 136 GNFPEIQAKALFYTIFHDMLICARNRLNRESQLVIEQVVEYIHHHYMEPMTVKKLADMSG 195 Query: 200 XXPNYFIPYFKKFMGVTPMHYVQLKRMELAKKQLSYTSFSISDIAEQVG-LELAHFSKTF 258 F FKK++G+ P+ Y+ R++ AK L ++ SI+DIAE +G L+ +FS+ F Sbjct: 196 MGVKPFSYLFKKYIGMFPIDYLIQYRLKRAKNLLVSSNSSIADIAESIGYLDALYFSRLF 255 Query: 259 KKTTGVSPSAYR 270 KK G SP+A+R Sbjct: 256 KKHIGCSPTAFR 267 >lin1114_2 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 145 Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Query: 167 HSSDQRKLAHVLEYIDQRLMRPXXXXXXXXXXXXXPNYFIPYFKKFMGVTPMHYVQLKRM 226 H D +++ L+YI++ L RP YF FKK M V ++YV K+M Sbjct: 37 HHEDNKEIRKALKYIEKNLNRPITLDEVASHVYLSSYYFSKLFKKEMNVNFINYVNQKKM 96 Query: 227 ELAKKQLSYTSFSISDIAEQVGL-ELAHFSKTFKKTTGVSPSAYRNSTR 274 LAK L +SI ++A +G + ++F K F+K V+P YR + + Sbjct: 97 SLAKDMLKNPRWSIDNVARNLGFTQTSYFCKVFRKEFDVTPKGYRETLK 145 >STM0104 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 281 Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 14/232 (6%) Query: 47 RGEGKVIINGVAYYPRPGQLMIMPAGSTQTTETSPD-NPYARYFCHFD--AHIGEW---P 100 RGEG + NG + RPG +++ P G PD + + + +F A+ EW P Sbjct: 52 RGEGVINNNGEQFVCRPGDILLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWQEWLTWP 111 Query: 101 LFHSANKLYISDAADPDGVRAVFTEMISLFQDDSFLSKIRXXXXXXXXXXXXXXXXXYSD 160 + + D A +F ++IS Q + S++ Sbjct: 112 TIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLEQLLLRRMA------ 165 Query: 161 FIDELLHSSDQRKLAHVLEYIDQRLMRPX-XXXXXXXXXXXXPNYFIPYFKKFMGVTPMH 219 I+E LH ++ +YI L P+ F++ +G++ + Sbjct: 166 VINESLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGISVLS 225 Query: 220 YVQLKRMELAKKQLSYTSFSISDIAEQVGLE-LAHFSKTFKKTTGVSPSAYR 270 + + +R+ AK LS T I+ + VG + +FS+ FKK TG SPS +R Sbjct: 226 WREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFR 277 >SMa1749 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 299 Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 203 NYFIPYFKKFMGVTPMHYVQLKRMELAKKQLSYTSFSISDIAEQVGL-ELAHFSKTFKKT 261 ++F FK+ MG+TP+ + KR+EL KK L + ++ IA Q+G + AH +K F++ Sbjct: 223 SWFASVFKQTMGITPLQWQLAKRVELTKKLLGESDLPVASIAAQLGFADQAHLTKVFRQI 282 Query: 262 TGVSPSAYR 270 G +P+A+R Sbjct: 283 VGETPAAWR 291 >lin2345 [F] COG2169 Adenosine deaminase Length = 432 Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 11/106 (10%), Positives = 19/106 (17%), Gaps = 1/106 (0%) Query: 170 DQRKLAHVLEYIDQRLMRPXXXXXXXXXXXXXPNYFIPYFKKFMGVTPMHYVQLKRMELA 229 K A ID+ ++ K + EL Sbjct: 79 LIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELN 138 Query: 230 KKQLSYTSFSISDIAEQVGL-ELAHFSKTFKKTTGVSPSAYRNSTR 274 Y+ G + V + + R Sbjct: 139 GTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIR 184 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,838,783 Number of extensions: 633202 Number of successful extensions: 3009 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 3063 Number of HSP's successfully gapped: 18 Length of query: 274 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 169 Effective length of database: 26,268,361 Effective search space: 4439353009 Effective search space used: 4439353009 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 115 (48.9 bits)