BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0017.p (130 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2727 [T] COG2972 Predicted signal transduction protein with a ... 94 4e-20 BS_yesM [T] COG2972 Predicted signal transduction protein with a... 79 2e-15 BH2110 [T] COG2972 Predicted signal transduction protein with a ... 79 3e-15 SP0662 [T] COG2972 Predicted signal transduction protein with a ... 71 3e-13 BH2013_3 [T] COG2972 Predicted signal transduction protein with ... 68 3e-12 >BH2727 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 597 Score = 94.4 bits (233), Expect = 4e-20, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 4/131 (3%) Query: 1 VAIQCIKYGERLSVYYDIDPEVLEYATVKLILQPLIENALEHAWFGTTLG-IRLVVEKRE 59 V I +YGER+ V+Y + PE L Y KL+LQP IENA HA+ G I+++ ++ Sbjct: 454 VLINQARYGERIKVHYFVSPECLPYQMPKLVLQPFIENAFFHAFNKKKEGFIQVMAAVKD 513 Query: 60 AEIVFKVIDNGVGMNADTIRQILAPEGPRI---GYGIRNVDSRIKLHHGSGYGVTIASRS 116 +++F+++DNG GM+ + + G R G G+RNV RI+L +G YGV + S Sbjct: 514 EKLLFEIVDNGDGMDLEKVSLSSRYHGKRQLFHGIGVRNVHERIQLLYGKDYGVEMTSNI 573 Query: 117 GIGTCIQITIP 127 G GT + + +P Sbjct: 574 GNGTVVHVILP 584 >BS_yesM [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 577 Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 69/131 (52%), Gaps = 7/131 (5%) Query: 1 VAIQCIKYGERLSVYYDIDPEVLEYATVKLILQPLIENALEHAW--FGTTLGIRLVVEKR 58 + IQ ++ ERL DID EV KL LQPL ENA+++A F IR+ +K Sbjct: 448 MTIQRFRFEERLKFTLDIDDEVKHCLIPKLTLQPLAENAIQYALEPFTRPCAIRIQAKKA 507 Query: 59 EAEIVFKVIDNGVGMNADTIRQILAPEGPRIGYGIRNVDSRIKLHHGSGYGVTIASRSGI 118 + + V DNG GM+ +IL G R G G+ N+ RI L G YG+ I S Sbjct: 508 KGCVCITVEDNGPGMDG----RILESTGGR-GIGLWNIRERISLTFGEPYGLRIHSEHEK 562 Query: 119 GTCIQITIPCR 129 GT I ITIPCR Sbjct: 563 GTRIVITIPCR 573 >BH2110 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 585 Score = 78.6 bits (192), Expect = 3e-15, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 6/131 (4%) Query: 3 IQCIKYGERLSVYYDIDPEVLEYATVKLILQPLIENALEHAWFGTTLG--IRLVVEKREA 60 IQ ++G+++ DID E +Y ++ P +ENA H I++ VEK + Sbjct: 447 IQKYRFGDKMEYELDIDEEAYDYIIPNMVFLPFVENASIHGIESVKEKGIIQIRVEKNDG 506 Query: 61 EIVFKVIDNGVGMN----ADTIRQILAPEGPRIGYGIRNVDSRIKLHHGSGYGVTIASRS 116 EIV+++ DNG GM+ A I + E GI+NV R+KLH+ + + +I SR Sbjct: 507 EIVYEISDNGAGMDEEKLASLIETLKNEENMGENVGIKNVYYRLKLHYKNHFDFSINSRP 566 Query: 117 GIGTCIQITIP 127 G GT +QI +P Sbjct: 567 GQGTTVQIKLP 577 >SP0662 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 563 Score = 71.2 bits (173), Expect = 3e-13, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 14/131 (10%) Query: 3 IQCIKYGERLSVYYDIDPEVL--EYATVKLILQPLIENALEHAWFGTTLG---IRLVVEK 57 IQ +YG++L Y+I+ V KL+LQPL+ENAL H G I+L V+K Sbjct: 434 IQKQRYGDKLE--YEINENVAFDNLVLPKLVLQPLVENALYHG-IKEKEGQGHIKLSVQK 490 Query: 58 REAEIVFKVIDNGVGMN--ADTIRQILAPEGPRIGYGIRNVDSRIKLHHGSGYGVTIASR 115 +++ +V ++ D+GVG D+ + L R G G++NVD R+KLH G+ Y + I SR Sbjct: 491 QDSGLVIRIEDDGVGFQDAGDSSQSQLK----RGGVGLQNVDQRLKLHFGANYHMKIDSR 546 Query: 116 SGIGTCIQITI 126 GT ++I I Sbjct: 547 PQKGTKVEIYI 557 >BH2013_3 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 216 Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 6/131 (4%) Query: 1 VAIQCIKYGERLSVYYDIDPEVLEYATVKLILQPLIENALEHAWFGTTLG--IRLVVEKR 58 V I+ ++GERL V++D D V+ L +QPL+ENAL+H G + + ++K+ Sbjct: 85 VYIEQERFGERLKVHWDKDEHVV-CNLPPLSIQPLVENALKHGVLKKPEGGNVHIRIKKQ 143 Query: 59 EAEIVFKVIDNGVGMNADTIRQILAPEGPRI-GYGIRNVDSRIKLHHGSGYGVTIASRSG 117 E + + D+GVGM+ T+ +L + ++ G G+ N D R+K G G+ + S+ G Sbjct: 144 EETVKIMITDDGVGMDKATLNNVLTRKPDQVSGIGMLNTDLRLK--QLFGKGLFVESQPG 201 Query: 118 IGTCIQITIPC 128 GT I +P Sbjct: 202 KGTSISFYVPL 212 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.143 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 9,763,223 Number of extensions: 379597 Number of successful extensions: 815 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 800 Number of HSP's successfully gapped: 18 Length of query: 130 Length of database: 38,378,431 Length adjustment: 94 Effective length of query: 36 Effective length of database: 27,537,035 Effective search space: 991333260 Effective search space used: 991333260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 109 (46.6 bits)