BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0014.p
         (85 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPy1556 [T] COG4753 Response regulator containing CheY-like rece...    65   3e-11
BH1123 [T] COG4753 Response regulator containing CheY-like recei...    64   6e-11
BH3842 [T] COG4753 Response regulator containing CheY-like recei...    63   1e-10
BH2109 [T] COG4753 Response regulator containing CheY-like recei...    63   1e-10
BH1910 [T] COG4753 Response regulator containing CheY-like recei...    60   7e-10

>SPy1556 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 246

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 55/82 (67%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L+  A    FSPN+L  +  +E G+ F DY+   RL++ K+LL    LK+YE A +VG++
Sbjct: 161 LKSLAQQLGFSPNYLSVLIKKELGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFE 220

Query: 62  NLSHFSKQFKEFYGVSPGDYRR 83
           ++++FS++FK+  GV+P  Y++
Sbjct: 221 DMNYFSQRFKQLVGVTPSQYKK 242


>BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 526

 Score = 63.5 bits (153), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 48/79 (60%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L+D A+    S N+LGQIF +  G  F +YV   R+E+ K ++ +    +YE + +VGY 
Sbjct: 443 LQDIADELYISRNYLGQIFKKVVGESFKNYVTRLRMEKAKKMIQEGNFLIYEVSEKVGYV 502

Query: 62  NLSHFSKQFKEFYGVSPGD 80
           N ++F+  FK++ G +P D
Sbjct: 503 NPAYFTTMFKKYTGYTPRD 521


>BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 530

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L D A H   SP ++ ++F E   + FS+YV   R+E  K LLS  +  + E    +GYK
Sbjct: 434 LDDLAKHIGLSPYYVSKLFKERFDLTFSEYVTQLRVEHAKQLLSLTQKSLKEITYEIGYK 493

Query: 62  NLSHFSKQFKEFYGVSPGDYRRHL 85
           + ++FS+ FK+  G SP DYR+ +
Sbjct: 494 DPNYFSRVFKKLTGKSPSDYRKSI 517


>BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 525

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L+  A+ F  +P ++GQ+F +  GVYF +Y+   R+   K LL    ++VYE A RVG+ 
Sbjct: 440 LKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKLRMNEAKKLLRQTDMRVYEVAERVGFG 499

Query: 62  NLSHFSKQFKEFYGVSPGDYRRHL 85
           +  +F  QF++   ++P +YR  L
Sbjct: 500 STDYFVTQFEKINKMTPTEYRNKL 523


>BH1910 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 506

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L   A+ F+++  +LG++F   TG YF+ Y+   R+E  K LL     KVYE A ++GY 
Sbjct: 416 LETLASVFNYNRAYLGKLFKNYTGEYFNTYLDKVRIENGKRLLQ-KGYKVYEVAEKIGYA 474

Query: 62  NLSHFSKQFKEFYGVSPGDYRR 83
           N+ +F ++FK++ GVSP  +R+
Sbjct: 475 NVDYFHRKFKKYVGVSPSTFRK 496


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,485,108
Number of extensions: 203268
Number of successful extensions: 1357
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 1361
Number of HSP's successfully gapped: 43
Length of query: 85
Length of database: 38,378,431
Length adjustment: 55
Effective length of query: 30
Effective length of database: 32,035,061
Effective search space: 961051830
Effective search space used: 961051830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)