BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0012.p (262 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2109 [T] COG4753 Response regulator containing CheY-like recei... 104 1e-22 SPy1587 [T] COG4753 Response regulator containing CheY-like rece... 101 2e-21 SP0661 [T] COG4753 Response regulator containing CheY-like recei... 92 7e-19 BH0793 [T] COG4753 Response regulator containing CheY-like recei... 88 2e-17 SP0156 [T] COG4753 Response regulator containing CheY-like recei... 87 2e-17 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 133/269 (49%), Gaps = 22/269 (8%) Query: 1 MYKXXXXXXXXXXXXGLQRFMNWEGLGMEVCAAASSGFEALEVLESQAVDIIVTDIRMPI 60 MYK GL+ + WE G EV A A +G +A ++++ D+++TDIRMP+ Sbjct: 1 MYKVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPV 60 Query: 61 MSGMELARRALE-LNPKLKIIFVSGYEDFQYAKQAISMSASGYVLKPVDDADMRRSLEEV 119 G++L ++ E L+ K I +SGY DF YA++A+ A +VLKP+D ++ +L ++ Sbjct: 61 FDGLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALIKL 120 Query: 120 RETLDREQEHLHLERYFSESEPLLRRELFMQLLDGNPDEAKMLPLLQRVGIYWSDTR--L 177 TLD+E+ S+ E +L ++F+ L N E ++ ++ I + R Sbjct: 121 AATLDQEKATN------SDQEKVLLDQIFIHSLGENKKENEVRRWAAKLNI---NNRHFY 171 Query: 178 YTALLEPDDMSWKLNGYSDGAKAEIENMLEAAIERYCAEEQIQACRTERFH-YA-LILEE 235 Y LLE +++S ++ K I ++ + R A E+ A + H Y LI E Sbjct: 172 YYLLLEVNNLSLDKGFINEQYKEPIRKVIRETVARQAATEEYTAIYEQLDHAYGLLITSE 231 Query: 236 HVDR--GRLHRLIQ------QAVAGTPLT 256 H+ + G++ L + Q PLT Sbjct: 232 HLKKFNGQIEPLAEKLRKDIQDFTNIPLT 260 >SPy1587 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 494 Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 1 MYKXXXXXXXXXXXXGLQRFMNWEGLGMEVCAAASSGFEALEVLESQAVDIIVTDIRMPI 60 MYK GL ++W+ LG EV A SG EAL L VD++++D+ MP Sbjct: 1 MYKVLLVDDEYMILQGLTMIIDWQALGFEVVQTARSGKEALAYLTQYPVDVMISDVTMPG 60 Query: 61 MSGMELARRALELNPKLKIIFVSGYEDFQYAKQAISMSASGYVLKPVDDADMRRSLEEVR 120 M+G++L A +P+L+ + +SGY++F Y ++A+ + GY+LKPVD A+++ +++ + Sbjct: 61 MTGLDLIEAAKTYHPQLQTLILSGYQEFSYVQKAMELETKGYLLKPVDKAELQAKMKQFK 120 Query: 121 ETLDREQ-EHLHLERYFSESEPL-----LRRELFMQLLDGNPDEA 159 + LD +Q E + E Y L L + F QL G P A Sbjct: 121 DWLDAQQAESIRQEAYHDSLLTLWLTDELSEKEFQQLSQGLPAAA 165 >SP0661 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 245 Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 73/118 (61%) Query: 16 GLQRFMNWEGLGMEVCAAASSGFEALEVLESQAVDIIVTDIRMPIMSGMELARRALELNP 75 GL + +N ME+ A +G +A E+++ Q DII+TDI MP ++G++LA E P Sbjct: 17 GLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMPHLNGIQLASLVRETYP 76 Query: 76 KLKIIFVSGYEDFQYAKQAISMSASGYVLKPVDDADMRRSLEEVRETLDREQEHLHLE 133 ++ ++F++GY+DF YA A+ + Y+LKP D+ L ++++ LD+E++ L+ Sbjct: 77 QVHLVFLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEMLGKIKQKLDKEEKEEQLQ 134 >BH0793 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 508 Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 70/110 (63%) Query: 16 GLQRFMNWEGLGMEVCAAASSGFEALEVLESQAVDIIVTDIRMPIMSGMELARRALELNP 75 GL+ ++W LG E+ A A +G EALE+ + + D+++TDI+MP +G+EL E Sbjct: 16 GLKHLIDWGQLGYEIVATARNGVEALEIAKYVSFDLLITDIKMPEKTGLELIAALNEREK 75 Query: 76 KLKIIFVSGYEDFQYAKQAISMSASGYVLKPVDDADMRRSLEEVRETLDR 125 ++ I +SG+++F + KQ +++ Y+LKP+++ ++ +L V+E ++ Sbjct: 76 TIRSIVLSGFQEFHFVKQGLTLGIENYLLKPINEKELISTLSHVKEKINH 125 >SP0156 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 428 Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 70/119 (58%) Query: 1 MYKXXXXXXXXXXXXGLQRFMNWEGLGMEVCAAASSGFEALEVLESQAVDIIVTDIRMPI 60 MYK GL+R + ++ MEV A AS EALE ++ VD+I++D+ MP Sbjct: 1 MYKVLLVDDEYMVTEGLKRLIPFDKWDMEVVATASHADEALEYVQENPVDVIISDVNMPD 60 Query: 61 MSGMELARRALELNPKLKIIFVSGYEDFQYAKQAISMSASGYVLKPVDDADMRRSLEEV 119 +G+++ R E+ P I +SGY++F Y K+A+++S Y++KPVD ++ LE++ Sbjct: 61 KTGLDMIREMKEILPDAAYILLSGYQEFDYVKRAMNLSVVDYLVKPVDKVELGNLLEKI 119 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,699,200 Number of extensions: 716944 Number of successful extensions: 2086 Number of sequences better than 1.0e-05: 136 Number of HSP's gapped: 2192 Number of HSP's successfully gapped: 136 Length of query: 262 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 158 Effective length of database: 26,383,695 Effective search space: 4168623810 Effective search space used: 4168623810 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)