BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0008.p (318 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 195 9e-50 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 191 1e-48 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 171 1e-42 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 170 2e-42 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 165 9e-41 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 195 bits (495), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 102/251 (40%), Positives = 152/251 (60%), Gaps = 6/251 (2%) Query: 19 SAGDKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLDNYEVV 78 S G +V + Y L L I PF + + SF + +P + +LD Y + Sbjct: 6 SLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYI 65 Query: 79 XXXXRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGRKVYMVFCIITMYFS 138 I + +ISIL T+VGT S+ T+++AYGLSR +L GR+V M + TM FS Sbjct: 66 F---STDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFS 122 Query: 139 GGLIPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAGLVESARIDGCNHLG 198 GG+IPTFL++R G++DT+W L+IP I+ +N+II + FF +P L ESA+IDGCN +G Sbjct: 123 GGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVG 182 Query: 199 VLTRIILPISGPVVATLSLFTAVYHWNDWFSASIYINDTRLIPIQTLLKQILNSNIVTDQ 258 + RI+ P+S P +AT+SLF AV +WN + A +Y+ND+ + PIQ LL+QI+ I++ Sbjct: 183 IFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIV---IMSSG 239 Query: 259 LQKAIGSSAAG 269 +Q + AG Sbjct: 240 MQGDLTELGAG 250 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 156/248 (62%), Gaps = 6/248 (2%) Query: 22 DKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLDNYEVVXXX 81 +++ ++IY LL+ I + PF + + SF + P + +LD Y + Sbjct: 3 NRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIF-- 60 Query: 82 XRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGRKVYMVFCIITMYFSGGL 141 I + L+S+ T++GT +S+ ++++AYGLSR +L+GR+ M + TM FSGG+ Sbjct: 61 -STDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGM 119 Query: 142 IPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAGLVESARIDGCNHLGVLT 201 IPTFL+++ G++D++W L++P I+ +N+II + FF +P+ L ESA+IDGCN LG+ Sbjct: 120 IPTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFF 179 Query: 202 RIILPISGPVVATLSLFTAVYHWNDWFSASIYINDTRLIPIQTLLKQILNSNIVTDQLQK 261 +I+LP+S P +AT+SLF AV +WN + +A +Y+ND+ PIQ LL+QI+ IV+ +Q Sbjct: 180 KIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIV---IVSSGMQG 236 Query: 262 AIGSSAAG 269 + +G Sbjct: 237 DMSEMGSG 244 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 144/232 (62%), Gaps = 7/232 (3%) Query: 36 LGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLDNYEVVXXXXRDSRIGHAFLISI 95 +G IT+ PF + SF ++ A +P++ TLD Y+ V R + +SI Sbjct: 27 VGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLR---SMGVSI 83 Query: 96 LRTIVGTTLSVLFTAILAYGLSRHELMGRKVYMVFCIITMYFSGGLIPTFLLLREFGMMD 155 T+VGT + + FT +AY L++ + GR + + I +M FSGG+IPT+L+++ G++D Sbjct: 84 FITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLD 143 Query: 156 TFWVLVIPGMISVYNMIIFRTFFLGLPAGLVESARIDGCNHLGVLTRIILPISGPVVATL 215 T+W L++P I+ +N+II + FF LP L ESA+IDGC+ +GV RI LP+S PV+AT Sbjct: 144 TYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATF 203 Query: 216 SLFTAVYHWNDWFSASIYINDTRLIPIQTLLKQILNSNIVT----DQLQKAI 263 +LF AV WND+F A +YIND+ P+Q +L+Q+ + +T D +Q A+ Sbjct: 204 ALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSDLTATNGDTMQNAV 255 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 136/235 (57%), Gaps = 6/235 (2%) Query: 19 SAGDKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLDNYEVV 78 + G KV YT LLL + + P + +S + A + F P TLD YE Sbjct: 6 TKGYKVFTAFNYTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYE-- 63 Query: 79 XXXXRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHE--LMGRKVYMVFCIITMY 136 D+ I +FLIS++R ++GT +S+ AY LS+ + GRK Y+ F +ITM Sbjct: 64 RTIANDNFI-RSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITML 122 Query: 137 FSGGLIPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFF-LGLPAGLVESARIDGCN 195 F+GGL+PT++++ G+ +T W LV+P I+ +N+I+ FF +P L ESA IDG N Sbjct: 123 FNGGLVPTYMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGAN 182 Query: 196 HLGVLTRIILPISGPVVATLSLFTAVYHWNDWFSASIYINDTRLIPIQTLLKQIL 250 H + +I LPIS P +AT+SLFT V+HWN WF IY ND R P+QT L+ I+ Sbjct: 183 HFQIFLKIYLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIV 237 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 95/264 (35%), Positives = 155/264 (58%), Gaps = 7/264 (2%) Query: 5 NLAQESGERVMMKLSAGDKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGIT 64 +ES + +M + D+ + ++ +++ + +TL P +V SF GI+ Sbjct: 4 EFKEESMKNSIMD-TKFDRRILLLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGIS 62 Query: 65 FWPRSPTLDNYEVVXXXXRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGR 124 F P T++ Y+ V D I F+ S+L + L+VL + AY LS+ +L+GR Sbjct: 63 FNPADWTVEGYQRVF---SDQSILRGFINSLLYSFGFAALTVLLSVFTAYPLSKKDLVGR 119 Query: 125 KVYMVFCIITMYFSGGLIPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAG 184 + F I+TM+F GGL+PT+LL++E GM++T W +++PG ++V+N+I+ R +F GLP Sbjct: 120 RWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEE 179 Query: 185 LVESARIDGCNHLGVLTRIILPISGPVVATLSLFTAVYHWNDWFSASIYINDTRLIPIQT 244 LVE+A IDG N L + +I+LP++ P++ L L+ V WN +F A IYI D L P+Q Sbjct: 180 LVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQL 239 Query: 245 LLKQILNSNIVTDQLQKAIGSSAA 268 +L++IL I + Q IG+ AA Sbjct: 240 VLRKIL---IQSQPGQDMIGAQAA 260 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,476,848 Number of extensions: 720260 Number of successful extensions: 3387 Number of sequences better than 1.0e-05: 140 Number of HSP's gapped: 3243 Number of HSP's successfully gapped: 140 Length of query: 318 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 212 Effective length of database: 26,153,027 Effective search space: 5544441724 Effective search space used: 5544441724 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)