BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0007.p (231 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 234 1e-61 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 221 5e-58 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 204 7e-53 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 198 5e-51 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 196 4e-50 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 114/229 (49%), Positives = 161/229 (70%), Gaps = 1/229 (0%) Query: 1 MRNTIVISLLKLCIGFPAPILLALMLNEVRLMLFKRIIQTVSYLPHFLSWVIVGGFVGSM 60 +RNT+ +S++ L +GF PIL A++LNEVR M+FKR +QTVSYLPHF+SWV+V G V M Sbjct: 89 LRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIVTKM 148 Query: 61 LSTDNGSVNMLLMNLHLTSEPISFLSVPEYFWGILVGTGIWKEMGFAAIVYLAAIAGIDP 120 LS D G VN LLM +P+ F++ E+FW I+ + +WKEMG+ +I++LAA+AGIDP Sbjct: 149 LSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAGIDP 208 Query: 121 HLYEAASIDGAGRFKQIQLITLPCIRPVIIIFLILAVGNILNAGFEDILILATNPILRDV 180 LYEAA +DGA R++QI ITLP IRP I++ LIL++G+++ GFE +L NP++ D Sbjct: 209 QLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLG-NPLVVDY 267 Query: 181 SDVIDTYVYRMGILNNRFSYAAAAGLFKAVVSIGLLALANKAARKMGSS 229 S+V+D Y G+ R+SY A G+F +VV I LL LAN ++ + Sbjct: 268 SEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQ 316 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 221 bits (564), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 114/229 (49%), Positives = 159/229 (69%), Gaps = 1/229 (0%) Query: 1 MRNTIVISLLKLCIGFPAPILLALMLNEVRLMLFKRIIQTVSYLPHFLSWVIVGGFVGSM 60 +RNT+ +SL+ L +GF I LA++LNE+R + FKR++QT+SY+PHFLSWV+ G V + Sbjct: 107 LRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAA 166 Query: 61 LSTDNGSVNMLLMNLHLTSEPISFLSVPEYFWGILVGTGIWKEMGFAAIVYLAAIAGIDP 120 LS +NG +N++LM L + SEPI +L V EYFWGI+ + +WK +G+ I+YLAAI ID Sbjct: 167 LSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDT 226 Query: 121 HLYEAASIDGAGRFKQIQLITLPCIRPVIIIFLILAVGNILNAGFEDILILATNPILRDV 180 YEAA IDGA R ++I ITLP +RPVI+I LI+ +G IL +GFE +L NP+ D Sbjct: 227 EQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLL-MNPMNMDF 285 Query: 181 SDVIDTYVYRMGILNNRFSYAAAAGLFKAVVSIGLLALANKAARKMGSS 229 ++ +D +V R GI FS A AAG+FK VVS L AN A+++G + Sbjct: 286 AENLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEA 334 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 204 bits (520), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 108/226 (47%), Positives = 155/226 (68%), Gaps = 3/226 (1%) Query: 3 NTIVISLLKLCIGFPAPILLALMLNEVRLMLFKRIIQTVSYLPHFLSWVIVGGFVGSMLS 62 NT+VIS+LK+ G PI++AL+LNE+ M+ KR +QT+ YLP+FLSWVI+GG + +LS Sbjct: 91 NTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLS 150 Query: 63 TDNGSVNMLLMNLHLTSEPISFLSVPEYFWGILVGTGIWKEMGFAAIVYLAAIAGIDPHL 122 D G VN L + +PI FL ++F +V + +WKE GF IV+LAAI ++P+L Sbjct: 151 PDGGIVNQALGLFGI--DPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNL 208 Query: 123 YEAASIDGAGRFKQIQLITLPCIRPVIIIFLILAVGNILNAGFEDILILATNPILRDVSD 182 YEAA +DGA R+KQ ITLP + P+II+ L++GNILNAGF+ I L NP++ D Sbjct: 209 YEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLY-NPLVYQTGD 267 Query: 183 VIDTYVYRMGILNNRFSYAAAAGLFKAVVSIGLLALANKAARKMGS 228 +IDTYVYR+ ++N FSY A GLFK+++S+ L+ + + A K + Sbjct: 268 IIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYKYAN 313 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 198 bits (504), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 106/229 (46%), Positives = 158/229 (68%), Gaps = 3/229 (1%) Query: 1 MRNTIVISLLKLCIGFPAPILLALMLNEVRLMLFKRIIQTVSYLPHFLSWVIVGGFVGSM 60 +RNT+V+ L L FP PI+LA++LNE+RLM+FKR +QT+ Y+PHF+SWVIV + Sbjct: 97 LRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVL 156 Query: 61 LSTDNGSVNMLLMNLHLTSEPISFLSVPEYFWGILVGTGIWKEMGFAAIVYLAAIAGIDP 120 +TD G +N ++ ++ T + ++FL ++F + + IW+E G+A I+Y AAIA IDP Sbjct: 157 FTTDGGVINEIIYSI--TGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAAIAAIDP 214 Query: 121 HLYEAASIDGAGRFKQIQLITLPCIRPVIIIFLILAVGNILNAGFEDILILATNPILRDV 180 LYEAA +DGA RF+QI ITLP IR VI++ LIL +G+IL GFE + ++ N + R+V Sbjct: 215 SLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLM-LNAMNREV 273 Query: 181 SDVIDTYVYRMGILNNRFSYAAAAGLFKAVVSIGLLALANKAARKMGSS 229 +++ DTYVY G+ +FSY+ A G FK++V + ++ LAN A+K G Sbjct: 274 AEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFGEE 322 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 111/229 (48%), Positives = 154/229 (67%), Gaps = 3/229 (1%) Query: 1 MRNTIVISLLKLCIGFPAPILLALMLNEVRLMLFKRIIQTVSYLPHFLSWVIVGGFVGSM 60 +RNT++++ L L FPAP++LAL+LNEVR ++KR IQT Y+PHF+SW IV Sbjct: 90 LRNTLMLASLDLLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVF 149 Query: 61 LSTDNGSVNMLLMNLHLTSEPISFLSVPEYFWGILVGTGIWKEMGFAAIVYLAAIAGIDP 120 + D G +N L+M+L T E ISFLS ++F ++V IWKE G+ I++LAA+A +D Sbjct: 150 FTVDTGVINKLIMSL--TGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQ 207 Query: 121 HLYEAASIDGAGRFKQIQLITLPCIRPVIIIFLILAVGNILNAGFEDILILATNPILRDV 180 YEAA +DGAGRF+++ ITLP IR II+ LIL +G+ LN GFE + ++ TN + R V Sbjct: 208 EQYEAAIMDGAGRFRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLM-TNSLNRSV 266 Query: 181 SDVIDTYVYRMGILNNRFSYAAAAGLFKAVVSIGLLALANKAARKMGSS 229 +D+ DTYVY MGI +SY+ A GLFK+VV I L+ AN A+K Sbjct: 267 ADIFDTYVYMMGITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQE 315 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.144 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,427,379 Number of extensions: 703523 Number of successful extensions: 2212 Number of sequences better than 1.0e-05: 130 Number of HSP's gapped: 2177 Number of HSP's successfully gapped: 130 Length of query: 231 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 128 Effective length of database: 26,499,029 Effective search space: 3391875712 Effective search space used: 3391875712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 114 (48.5 bits)