BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0004.p
         (809 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0539_1 [G] COG4124 Beta-mannanase                                   60   1e-08

>CAC0539_1 [G] COG4124 Beta-mannanase
          Length = 345

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 647 VTEAQMTDIVTPGTELYNQWAAQV----DEVAGYLEQLQ--DEGIPVLWRPYHEMNAEFF 700
           V   ++ DI T  + L   +   +    DE+  Y ++L   +    + +RP+HEMNA +F
Sbjct: 122 VANTKIQDINTSSSLLLQNYKTMISRIGDEIYNYHQKLNTYNANATIYYRPFHEMNASWF 181

Query: 701 WWGAR-PELFKQLWHNMYDRLTHLHGLNNLIWVWNPN 736
           WWG      FKQLW N++D L +  GL+ L + ++ N
Sbjct: 182 WWGEHDSNQFKQLWINIHDYLVNTRGLSWLKFCYSAN 218


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.132    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 64,086,089
Number of extensions: 2756639
Number of successful extensions: 6355
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6358
Number of HSP's successfully gapped: 1
Length of query: 809
Length of database: 38,378,431
Length adjustment: 115
Effective length of query: 694
Effective length of database: 25,115,021
Effective search space: 17429824574
Effective search space used: 17429824574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)