BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0063.p
         (154 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3002 [S] COG1633 Uncharacterized conserved protein                  91   1e-18

>CAC3002 [S] COG1633 Uncharacterized conserved protein
          Length = 187

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 68/109 (62%)

Query: 24  ALELMRNSVQGERNDELFYDQLIQLAPNPEQAEVITSIRNDERGHNQMFRQMYRELTGHE 83
           A+ L+  SV GER DELFY+ L+ +APN E   +IT IR+DER HN M R++Y +LT   
Sbjct: 55  AIRLIEESVGGEREDELFYNYLLSVAPNAEAKRIITGIRDDERKHNVMLRRIYTQLTRRT 114

Query: 84  VTGVSNEAPEQVTSYTAGLQKAFQGELSAVEKYRKIWFGLPYGVYKDTL 132
           +    +   ++ +SY  G++++  GE  AV++YR I F L   V+ + L
Sbjct: 115 LPQGQDGTFQKPSSYIDGIRQSIIGETDAVKRYRTILFALQNRVHINML 163


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,405,174
Number of extensions: 380457
Number of successful extensions: 621
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 57
Effective length of database: 27,191,033
Effective search space: 1549888881
Effective search space used: 1549888881
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)