BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0011.p
         (91 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDL128w [P] COG0387 Ca2+/H+ antiporter                                 54   4e-08
SMa0675 [P] COG0387 Ca2+/H+ antiporter                                 54   8e-08
SPCC1795.02c [P] COG0387 Ca2+/H+ antiporter                            52   2e-07

>YDL128w [P] COG0387 Ca2+/H+ antiporter
          Length = 411

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 1   MLAMKNKIGAAVEIAVGSSLQIALFVAPVLIFASYFMGNTMDXXXXXXXXXXXXXXXXXX 60
           ++AMK+K+  A+ +A+GSSLQ+ALFV P ++   + +   M                   
Sbjct: 308 LVAMKDKMDLALGVAIGSSLQVALFVTPFMVLVGWMIDVPMTLNFSTFETATLFIAVFLS 367

Query: 61  XXXXQDGATNWYEGLLLLAVYMILGVSFY 89
                DG +NW EG++ LA+Y+++ ++F+
Sbjct: 368 NYLILDGESNWLEGVMSLAMYILIAMAFF 396


>SMa0675 [P] COG0387 Ca2+/H+ antiporter
          Length = 398

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 3   AMKNKIGAAVEIAVGSSLQIALFVAPVLIFASYFMG-NTMDXXXXXXXXXXXXXXXXXXX 61
           A  N++  +V IA+GS+ QIALFVAPVL+  SYF+G   M                    
Sbjct: 303 ARANRLDLSVGIALGSAAQIALFVAPVLVLVSYFIGPQPMSLEFWPGAVAMMLVATMAAT 362

Query: 62  XXXQDGATNWYEGLLLLAVYMILGVSFYLV 91
                G   WY G++ LAVY I  ++ +L+
Sbjct: 363 LLSNGGHAAWYAGVMALAVYAIFALTLFLL 392


>SPCC1795.02c [P] COG0387 Ca2+/H+ antiporter
          Length = 77

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 0/85 (0%), Positives = 0/85 (0%)

Query: 5   KNKIGAAVEIAVGSSLQIALFVAPVLIFASYFMGNTMDXXXXXXXXXXXXXXXXXXXXXX 64
                                                                       
Sbjct: 324                                                              383

Query: 65  QDGATNWYEGLLLLAVYMILGVSFY 89
                                    
Sbjct: 384                           408


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.328    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,377,205
Number of extensions: 101380
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 3
Length of query: 91
Length of database: 38,378,431
Length adjustment: 61
Effective length of query: 30
Effective length of database: 31,343,057
Effective search space: 940291710
Effective search space used: 940291710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)