BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0009.p (121 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2085 [S] COG1302 Uncharacterized protein conserved in bacteria 99 1e-21 SA1984 [S] COG1302 Uncharacterized protein conserved in bacteria 86 2e-17 BH2786 [S] COG1302 Uncharacterized protein conserved in bacteria 84 4e-17 lin1395 [S] COG1302 Uncharacterized protein conserved in bacteria 72 2e-13 BH2499 [S] COG1302 Uncharacterized protein conserved in bacteria 70 7e-13 >CAC2085 [S] COG1302 Uncharacterized protein conserved in bacteria Length = 131 Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 2/121 (1%) Query: 1 MAEQLQ-LEMGNIRISNDVVSKIAGLAALETPGIAAMSGGLSEGWAKRLSGK-NVQKGVT 58 MAE+L+ ++MG ++IS++VV IAGLAA E G+ MS G+ G K LSGK N+ KGV Sbjct: 1 MAEELKNIDMGIVKISDEVVCVIAGLAASEIKGVVGMSSGIVGGITKILSGKKNLTKGVK 60 Query: 59 VEVGQLEAAVDLRIIVLYETPIHEVCRMLQQNVREAVESMTGLHIVEVNVKVEGVAFKND 118 V VG+ A++DL +++ Y I +V +Q+NV+ VES+TGL++ VNV V+ VAF N Sbjct: 61 VNVGEESASIDLYVVIEYGLRIPDVAVKVQENVKTTVESLTGLNVSAVNVFVQNVAFSNK 120 Query: 119 E 119 + Sbjct: 121 Q 121 >SA1984 [S] COG1302 Uncharacterized protein conserved in bacteria Length = 169 Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 71/103 (68%), Gaps = 1/103 (0%) Query: 12 IRISNDVVSKIAGLAALETPGIAAMSGGLSEGWAKRLS-GKNVQKGVTVEVGQLEAAVDL 70 + S++VV KIAG+AA E GI M GGL++ + S G NV +GV+VEVG+ +AAVDL Sbjct: 42 LTFSDEVVEKIAGIAAREVKGILDMKGGLTDTFTNAFSSGNNVTQGVSVEVGEKQAAVDL 101 Query: 71 RIIVLYETPIHEVCRMLQQNVREAVESMTGLHIVEVNVKVEGV 113 ++I+ Y ++ R + + V+E V+ +TGL +VEVN++V+ V Sbjct: 102 KVILEYGESAPKIFRKVTELVKEQVKYITGLDVVEVNMQVDDV 144 >BH2786 [S] COG1302 Uncharacterized protein conserved in bacteria Length = 132 Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 73/114 (64%) Query: 3 EQLQLEMGNIRISNDVVSKIAGLAALETPGIAAMSGGLSEGWAKRLSGKNVQKGVTVEVG 62 E+ + ++G + IS +V+ IAG+AA E G+A M G + G A++L KN KGV V++ Sbjct: 10 EEQKTDLGRVEISPEVIEVIAGIAASEVEGVATMRGNFAAGVAEKLGYKNHGKGVKVDLN 69 Query: 63 QLEAAVDLRIIVLYETPIHEVCRMLQQNVREAVESMTGLHIVEVNVKVEGVAFK 116 VD+ +I+LY + EV + +QQN+++A+++MT + + +NV + GV F+ Sbjct: 70 DEGIIVDVSVIILYGVSVPEVAKKIQQNIKQALQTMTAIELQSINVHIVGVHFE 123 >lin1395 [S] COG1302 Uncharacterized protein conserved in bacteria Length = 135 Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Query: 9 MGNIRISNDVVSKIAGLAALETPGIAAMSGGLSEGWAKRLSGK-NVQKGVTVEVGQLEAA 67 +G I I+ +V+ IAGLAA E +A M GG + ++ SG N +KGV VE+ + Sbjct: 15 LGKIEIAPEVIGVIAGLAASEIENVAYMQGGFATEMREKFSGAVNYRKGVKVELTEEGIL 74 Query: 68 VDLRIIVLYETPIHEVCRMLQQNVREAVESMTGLHIVEVNVKVEGVAFKNDE 119 ++L VL+ I V + +Q VR+ + +MTGL+++E+NV + GV F+ E Sbjct: 75 IELYCSVLFGATIPLVAQNIQDAVRDTIFNMTGLNVLEINVHIVGVQFEKTE 126 >BH2499 [S] COG1302 Uncharacterized protein conserved in bacteria Length = 120 Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 71/119 (59%), Gaps = 2/119 (1%) Query: 1 MAEQLQLEMGNIRISNDVVSKIAGLAALETPGIAAMSGG--LSEGWAKRLSGKNVQKGVT 58 M+ +++ ++G + +S DVV+ IAG AA++ GI M+ + +G ++ L +N ++GV Sbjct: 1 MSIEMKTQLGTVDVSKDVVATIAGGAAVDCYGIVGMASQKQIKDGLSELLGRENFRRGVV 60 Query: 59 VEVGQLEAAVDLRIIVLYETPIHEVCRMLQQNVREAVESMTGLHIVEVNVKVEGVAFKN 117 + + E +D+ IIV Y T I EV +Q V+ +E+M G+ + VN+ V+GV N Sbjct: 61 IREEEDEIHIDMYIIVSYGTKISEVAYNVQTKVKYQLETMLGIDVDSVNIFVQGVRVTN 119 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.132 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 8,217,534 Number of extensions: 304353 Number of successful extensions: 635 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 626 Number of HSP's successfully gapped: 19 Length of query: 121 Length of database: 38,378,431 Length adjustment: 87 Effective length of query: 34 Effective length of database: 28,344,373 Effective search space: 963708682 Effective search space used: 963708682 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 109 (46.6 bits)