BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0002.p
         (146 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2596 [S] COG3679 Uncharacterized conserved protein                   78   5e-15
lin2161 [S] COG3679 Uncharacterized conserved protein                  70   1e-12
BS_ylbF [S] COG3679 Uncharacterized conserved protein                  69   2e-12
SA0968 [S] COG3679 Uncharacterized conserved protein                   49   2e-06

>BH2596 [S] COG3679 Uncharacterized conserved protein
          Length = 147

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 69/124 (55%)

Query: 6   LNTVDMAEVLTYAYELGDMINQSAEVSDYLYWKGRVDANPEVQAMIKRLQGKKELFEETQ 65
           L ++D + ++  A +LG MI  S     Y+  K  +  + E Q +I      K++ EE Q
Sbjct: 2   LTSIDTSLLIEQADQLGAMIKDSEPFHHYIEAKRALQQDKEAQQLIAEFNKMKDMHEEVQ 61

Query: 66  RFGHFHPNYHAAKDEVTAVEQELERFEEVARFKQAEKTLDDMLHSMSETIAFSVSDSIKV 125
           RFG +HP+Y     E+  +++ L+    V  FK+AE  L+ +L+ +S  IA +VS SIKV
Sbjct: 62  RFGKYHPDYDRVSREIRMLKRTLDLHPSVVAFKEAEAELESLLNELSVMIARAVSPSIKV 121

Query: 126 PSND 129
           P+ +
Sbjct: 122 PTGN 125


>lin2161 [S] COG3679 Uncharacterized conserved protein
          Length = 149

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 70/124 (56%)

Query: 6   LNTVDMAEVLTYAYELGDMINQSAEVSDYLYWKGRVDANPEVQAMIKRLQGKKELFEETQ 65
           L T++   +L  + EL  MI  S E  +Y Y +  +  +   Q  I++    KE +EE Q
Sbjct: 2   LATMENMALLDLSDELASMILDSEEAQNYKYTRQVLLDDANSQKNIRQFIRIKEQYEEVQ 61

Query: 66  RFGHFHPNYHAAKDEVTAVEQELERFEEVARFKQAEKTLDDMLHSMSETIAFSVSDSIKV 125
           RFG +HP+Y     +  A ++E++  + VA F++AE  L  +L  +S  +A +VS++IKV
Sbjct: 62  RFGRYHPDYKEVTRKTRAYKREVDMDQNVATFRRAEMDLQSLLDEISLLLASAVSENIKV 121

Query: 126 PSND 129
           P+ +
Sbjct: 122 PTGN 125


>BS_ylbF [S] COG3679 Uncharacterized conserved protein
          Length = 271

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 3/122 (2%), Positives = 15/122 (12%)

Query: 8   TVDMAEVLTYAYELGDMINQSAEVSDYLYWKGRVDANPEVQAMIKRLQGKKELFEETQRF 67
              +    +                         +     +       G   L       
Sbjct: 4   IHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDA 63

Query: 68  GHFHPNYHAAKDEVTAVEQELERFEEVARFKQAEKTLDDMLHSMSETIAFSVSDSIKVPS 127
                  +     V    +      +  +     +                 ++   +  
Sbjct: 64  LCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFG 123

Query: 128 ND 129
             
Sbjct: 124 PL 125


>SA0968 [S] COG3679 Uncharacterized conserved protein
          Length = 144

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%)

Query: 20  ELGDMINQSAEVSDYLYWKGRVDANPEVQAMIKRLQGKKELFEETQRFGHFHPNYHAAKD 79
           EL DMI  S   + +   K  ++ N E   + +     KE ++E  RFG +HP+Y     
Sbjct: 15  ELADMIVASDIYASFEQAKQALENNDEAHLLYQSFLKSKEKYDEVMRFGKYHPDYKKVML 74

Query: 80  EVTAVEQELERFEEVARFKQAEKTLDDMLHSMSETIAFSVSDSIKVPSND 129
           E    ++  E  + V  +K  E  L  ++  +   IA++VS+ +K+ + +
Sbjct: 75  ETRQRKRAYEMLDVVMHYKAREMALQHLIDEVVTKIAYAVSEHVKIETGN 124


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,388,945
Number of extensions: 287023
Number of successful extensions: 478
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 4
Length of query: 146
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 50
Effective length of database: 27,306,367
Effective search space: 1365318350
Effective search space used: 1365318350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)