BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0545.0045.p
         (310 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0711 [K] COG2207 AraC-type DNA-binding domain-containing proteins   174   2e-43
lin1152 [K] COG2207 AraC-type DNA-binding domain-containing prot...    62   1e-09
CAC1333 [K] COG2207 AraC-type DNA-binding domain-containing prot...    59   7e-09
CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing prot...    59   8e-09
BH3679 [T] COG4753 Response regulator containing CheY-like recei...    59   1e-08

>BH0711 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 263

 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 138/234 (58%), Gaps = 16/234 (6%)

Query: 49  QVVGSCRALVNGKMSIIEPGDLLIYRPGEPYHLEVEEMDGKIESGDYYLLCEGSWIEEWW 108
           Q  G+C+  +N +   +E GDLL+  P + + L VE+ D    SGDY+LLCEG WI+ WW
Sbjct: 31  QTEGTCKVKLNEREFQLEKGDLLLTNPEDMFELIVEDGDN---SGDYHLLCEGDWIDAWW 87

Query: 109 KAQSRPIQQRIHMDTGMLSLWQQLYIEQHRIV-QRNPEXXXXXXXXXXXXXXXXXVDAVS 167
           +   +P    I +D  ++++W+ + +E  R V ++N E                   ++ 
Sbjct: 88  RRSEKPSVSTIDLDENIMAIWRCMILEDRRSVSEKNDEILHYLVQTLCL--------SLE 139

Query: 168 RQDPEGRSNE----LVVLMRRYINVNALRRLRVEEVAKAAGLSVSRAVHLFKKLTGFTII 223
           R   E +S       V  M RYI  NA+  ++VE+VAK AGLSVSR+ HLFK   G T+I
Sbjct: 140 RAAMETKSMSSRPYTVTRMMRYIEENAITGIKVEDVAKHAGLSVSRSAHLFKSSVGKTMI 199

Query: 224 RYTQEIRLSNAMERIRYTDLSLENIAGTCGFGTYSYFHKVFKARYGISPKEARN 277
            Y  EI+L+ A++ +++T  +LE+IA  CGFG+YSYFH+VFK  YGISP + R+
Sbjct: 200 EYAHEIKLAVAIDFLKHTTYTLEHIAEDCGFGSYSYFHRVFKKHYGISPGDYRS 253


>lin1152 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 183

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%)

Query: 184 RYINVNALRRLRVEEVAKAAGLSVSRAVHLFKKLTGFTIIRYTQEIRLSNAMERIRYTDL 243
           RYI  N  R + +EEVA    LS      LFK       I Y  E ++  A E++  +D 
Sbjct: 87  RYIKKNIHRSITLEEVANYVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDW 146

Query: 244 SLENIAGTCGFGTYSYFHKVFKARYGISPKEARN 277
           ++  IA   GF   SYF KVFK  + ++PKE R+
Sbjct: 147 AVHTIAKNLGFSRASYFCKVFKKEFDMTPKEYRD 180


>CAC1333 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 286

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 1/103 (0%)

Query: 172 EGRSNELVVLMRRYINVNALRRLRVEEVAKAAGLSVSRAVHLFKKLTGFTIIRYTQEIRL 231
           + + + L+  +  YI  N    + ++++A+   LS       FKK TG TI RY  + +L
Sbjct: 178 DTKKSNLIDEIIEYITFNIEEDITIDKIAEQFYLSKFHLSREFKKYTGTTIHRYIIQKKL 237

Query: 232 SNAMERIRYTDLSLENIAGTCGFGTYSYFHKVFKARYGISPKE 274
             A E I   D+S+ ++   CGFG YS F + FK  Y I+PK+
Sbjct: 238 IQAKELIL-KDISITDVYKKCGFGDYSNFFRAFKNEYKITPKQ 279


>CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 295

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%)

Query: 193 RLRVEEVAKAAGLSVSRAVHLFKKLTGFTIIRYTQEIRLSNAMERIRYTDLSLENIAGTC 252
           +L + E+A     S       FK++TG T   Y   IRL  +   ++ TDL++  IA  C
Sbjct: 201 KLTLNELADCVNFSTHHFCRTFKQMTGKTTTDYINGIRLYKSTNYLKQTDLNITEIAIKC 260

Query: 253 GFGTYSYFHKVFKARYGISPKEAR 276
           GF   +YF ++FK  Y ++P + R
Sbjct: 261 GFDNNNYFSRLFKKHYDMTPTKYR 284


>BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 257

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%)

Query: 185 YINVNALRRLRVEEVAKAAGLSVSRAVHLFKKLTGFTIIRYTQEIRLSNAMERIRYTDLS 244
           YI+ +  +++ +++VAK+  L+ S    LFK+ T  T   Y    RL +A   +  TD  
Sbjct: 162 YIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLLVSTDRP 221

Query: 245 LENIAGTCGFGTYSYFHKVFKARYGISPKEARN 277
           + +IA  CG+ T  YF K+FK   G++P + R 
Sbjct: 222 ISDIAEKCGYQTAKYFIKIFKEHEGMTPTQYRK 254


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 20,550,542
Number of extensions: 803668
Number of successful extensions: 2299
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 2310
Number of HSP's successfully gapped: 45
Length of query: 310
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 204
Effective length of database: 26,153,027
Effective search space: 5335217508
Effective search space used: 5335217508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)