BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0044.p (1103 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1685 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 699 0.0 CAC3303 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 490 e-138 CAC2996 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 471 e-132 FN1160 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 413 e-115 CAC3441 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 406 e-112 >lin1685 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 1072 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1047 (36%), Positives = 615/1047 (58%), Gaps = 54/1047 (5%) Query: 69 CACPAFKDYGSCKHEAATLIAISRLGQKDSVKD-KPQHLEQTTSFDLDLMLDSILKKQTA 127 C+C F+ CKH AT + + + QK + +D K + L Q ++ L L ++ Sbjct: 61 CSCADFQLNAICKHIYATHLKMEKEKQKAAKQDFKNRILTQESNTLLSLFQQNM------ 114 Query: 128 QGKPAAGQAYKPAEQLISSFSESNTGPAHDSSSLFGDAEQLQFEFILKTGISHRTAAFSL 187 A+QL +N P LQ ++I++ + ++ Sbjct: 115 ------------AQQLEVEEDITNKIP-------------LQTQYIIRLKPDDSSYIMTI 149 Query: 188 EMRVGVKRLYVVSKINRFLEHVEQHLPYYFTSHFTFDPKKQQINPADLAFLNALILIKNT 247 E++VG +R YVV +N FL + FT +F +DP + D L+ L+ I Sbjct: 150 EVKVGTERTYVVKNMNTFLAAIRDRQWLVFTKNFAYDPNEHFFLEEDKQILDKLLQISEI 209 Query: 248 EKVYRTSXXXXXXXXXXXXXRAIAVPPLGWEKLKPLLSE--VNVVLGSFGQPGTRAELIN 305 K+Y T + + +PP +L LL+E ++ + IN Sbjct: 210 AKMYDTDSFYWSKSYAEE--KNLTIPPSMAGELLELLTERDTTCIIMKERVEDIKYRGIN 267 Query: 306 ---EAPPFSFSIGKGGPKDYVLSASGIEKCNVFPEYSSMIVEGKIYSQDPAALHRIEQLQ 362 + F F + K Y L +++ F Y + +G + ++ L Sbjct: 268 VRRDNLDFIFELKKSADDKYQLEMEDLQQAIFFEAYQLLFFDGTFFIPVKEVWESLKPLI 327 Query: 363 QTLSASKG--LAISSQQIEPFIQRVVPALRELGAVKVDKTVQERIIQPELQCKIYLDYTE 420 + +K + S Q+ I V+PAL++ G +K+D ++++RI Q L CK+++ Sbjct: 328 EFHKVTKNEVVQFSESQLSEVISYVLPALQKSGKLKLDDSIEDRITQQPLDCKLFIALEY 387 Query: 421 GKLLTTLEFHYGDIVIDPLSSHQDYAKNGEIILVRNVQKEDEIIGMLDRSSMNREG-RQW 479 G+ LE+HYG+ + DP + ++ E I++R+V+KE ++ +++ + ++ G + Sbjct: 388 GEHTLRLEYHYGNQLFDPFAITEE---ENEKIMIRDVEKEARVMNIIESAPVHFSGTKMV 444 Query: 480 VSASELGMYEALHEFVPSLEEYADIYLTAAAQNLIMKRQASPKVRADLNEGLDWLHISFE 539 V+ E +Y+ + +P L EYA+IY+ + ++ + P D++ D+L +SF+ Sbjct: 445 VNKQEKDLYQFYYRTIPKLAEYAEIYMEDGLEEMV-EDNVRPVTTLDVSSDNDYLSVSFD 503 Query: 540 MEGLDEKETTRVMQAIVEKKKYIRLRSGAFLSLQTEGFHEFRTMADRLNLGKKDLKAPSI 599 +G+ E+E V++++ EK+ Y RL++G FLSL++E + + + L + KKD++ P++ Sbjct: 504 FKGIPEEEVQNVLESLREKRSYHRLKNGRFLSLESENYKQMEDVLQMLEVRKKDVQ-PNM 562 Query: 600 QLPSVHALQLPE---RRTSTKAMKWGKSLRLFLDQLKEPENMDFELPGQMKDILRDYQVK 656 Q+P +Q+ + T + K+ +S R L + F LP +K LRDYQ+ Sbjct: 563 QVPLYRGMQIYDILGAGTQDEHHKFSRSFRELLTDITTQSEDSFSLPKGLKAELRDYQLT 622 Query: 657 GFQWMKTLSRFRFGGILADDMGLGKTIQSIAYICSELEENPEKTKILIICPASLTYNWAN 716 GF+WMK+L+++ GGILADDMGLGKT+Q+I+++ SELEENP +LI+ PASL YNW + Sbjct: 623 GFEWMKSLAKYNLGGILADDMGLGKTVQTISFLASELEENPNLKPVLIVTPASLLYNWQS 682 Query: 717 EFASFAPEVKILVAAGQKEERSELLDGIDNEEAQVIITSYPLLRRDIDLYSGKSFHTLIL 776 E FAPE+ + V G K+ R ++ I + V + SYP LR+DI ++ +F ++I+ Sbjct: 683 ELEKFAPEIPVTVLHGTKQARMAEMEEI--KHGHVYLISYPSLRQDIIHFADVAFSSVII 740 Query: 777 DEAQAVKNAASQTAQAVKSIKAARKFALTGTPIENSIDELESIIGTVSPLLFSGRQSFRQ 836 DE+QA+KN ++ +QAV+++K FAL+GTP+ENSIDEL +I T+ P F + F++ Sbjct: 741 DESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKFKE 800 Query: 837 LPADRISSIVAPFILRRLKKDVLEELPDRIETVQRTELLLEQKQLYLAYLSKLREDTEQD 896 +P + I+ ++ PF+LRRLK+DV++ELPD+IET +EL EQK +YLAYL K++ D E+ Sbjct: 801 IPYENIAKMIRPFLLRRLKQDVVKELPDKIETNLYSELTDEQKTIYLAYLEKIQADLEES 860 Query: 897 LQGEGFQKSRMKILAGITRLRQLCCHPSLFVENYTGGSGKLDQLLELVEGCRASGKRMLV 956 G + R+K+LAG+TRLRQ+CC PSLFVENY G SGKL QL + ++ R +GKR+L+ Sbjct: 861 -NGNA-SEERIKLLAGLTRLRQICCDPSLFVENYQGESGKLLQLFDTIQTARENGKRILI 918 Query: 957 FSQFSSMLQLIRESLTASGIIPFYLDGSTPAGERVELCRRFNEGEGEVFLISLKAGGTGL 1016 FSQF+ ML +IR L G FY+DG TPA R+++ FNEGE ++FLISLKAGGTGL Sbjct: 919 FSQFTGMLAIIRRKLEEDGQPLFYMDGKTPAKTRLDMVNAFNEGENDIFLISLKAGGTGL 978 Query: 1017 NLTGADTVILYDLWWNPAVEEQAVGRAHRMGQRHVVQVIRMITEGTIEEKILELQQRKKN 1076 NL GADTVILYDLWWNPAVEEQA GRAHR+GQ+ VVQV RMIT+GTIEE+I +LQ++K+ Sbjct: 979 NLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIEERIFDLQKKKQA 1038 Query: 1077 LIEEIIESGENKASRLSEEDIRELLKM 1103 L++E+I+ GE +L+ E+I+++L++ Sbjct: 1039 LVDELIQPGEQMLGKLNTEEIKQILQL 1065 >CAC3303 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 1077 Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust. Identities = 315/947 (33%), Positives = 523/947 (55%), Gaps = 60/947 (6%) Query: 187 LEMRVGVK-----RLYVVSKINRFLEHVEQHLPYYFTSHFTFDPKKQQINPADLAFLNAL 241 E+++G+K LYV+ IN FL + Q++P + + K+Q+++ D ++ + Sbjct: 160 FELKIGLKTMTSNNLYVLKDINSFLLGIYQNIPIPYGKKLILNMKEQKLSVKDKKLVDFI 219 Query: 242 ILIKNTEKVYRTSXXXXXXXXXXXXXRAIAVPPLGWEKLKPLLSEVNVVLGSFGQPGTRA 301 +I N +K + + + + VP + ++ V L T Sbjct: 220 QMIINIDKPFSYNRKIKKSFIDG---KYVYVPDYLVREFFQVIKNHRVYLNEGFDLSTDV 276 Query: 302 ELINEAPPFSFSIGKGGPKDYVLSA-SGI-----EKCNVFPEYSSMIVEGKIYSQDPAAL 355 E+I E PP S+ + DYVLS SG+ K NVF + IY D Sbjct: 277 EIIEEKPPIEISL-RDVEDDYVLSVPSGMPISLSSKNNVF------LYGLGIYIPDYEYC 329 Query: 356 HRIEQLQQTLSASKGLAISSQQIEPFIQRVVPAL-RELGAVKVDKTVQERIIQPELQCKI 414 +I + + ++ + +S ++ E ++++VP L R ++ + + ++I+ + + K Sbjct: 330 EKIGPYFEVFNKAEEVRLSGEKEETILRKLVPDLKRLSNSISLSSNITDKIVVAKCEFKF 389 Query: 415 YLDYTEGKLLTTLEFHYGDIVIDPLSSHQDYAKNGEIILVRNVQKEDEIIGMLDRSSMNR 474 Y D +G + T++ YG + +D+ E ++ R+ ++E E++ + R Sbjct: 390 YFDNEDGNTILTVKVKYGAF---EFNIFEDF---NEKVIYRDSKREIEVLETVRALRFER 443 Query: 475 EGRQWVSASELGMYEALHEF---VPSLEEYADIYLTAAAQNLIMKRQASPKVRADLNEG- 530 +++ G A F + L++ +++ + + + K +S + + G Sbjct: 444 IKNKFLLG--FGDDYAFTFFKTEIVRLQKIGEVFYSENFKGI--KHISSKGISGHIKTGK 499 Query: 531 LDWLHISFEMEGLDEKETTRVMQAIVEKKKYIRLRSGAFLSLQTEGFHEFRTMADRLNLG 590 ++ + F+++ + ET +++A + KY +L++G F+ L+ F + D ++ Sbjct: 500 YNYFEMKFKIDDIPPGETVMILRAFRDNLKYYKLKNGEFIDLEELQLKNFLKLLD--SIS 557 Query: 591 KKDLKAPSIQLPSVHALQLPE--RRTSTKAMKWGKSLRLFLDQLKEPENMDFELPGQMKD 648 K L +I++P ++ + E + +K + L+ ++ KE ++++FELP +K Sbjct: 558 PKKLDENNIKIPKSKSIYVDEYLEEKGIRYIKGQEELKKIREKFKEEKSLEFELPRTLKG 617 Query: 649 ILRDYQVKGFQWMKTLSRFRFGGILADDMGLGKTIQSIAYICSELEENPEKTKILIICPA 708 R+YQ KG+ W+KTL F FGGIL D+MGLGKT Q I+++ S +P K K LI+ P Sbjct: 618 HPREYQKKGYNWLKTLDYFGFGGILGDEMGLGKTFQVISFLLS----SPGK-KSLIVVPT 672 Query: 709 SLTYNWANEFASFAPEVKILVAAGQKEERSELLDGIDNEEAQVIITSYPLLRRDIDLYSG 768 SL YNW EF FAP +K+ + G K+ER +++ ++ E QVIIT+Y LL+RD+ Y Sbjct: 673 SLVYNWIQEFERFAPSIKVAASVGTKKEREVIIENLN--EFQVIITTYNLLKRDLSSYMA 730 Query: 769 KSFHTLILDEAQAVKNAASQTAQAVKSIKAARKFALTGTPIENSIDELESIIGTVSPLL- 827 F ILDEAQ +KN SQ A +VK I A +FAL+GTP+ENS+ EL SI + P Sbjct: 731 LEFDYCILDEAQNIKNPHSQNAISVKKINAVNRFALSGTPMENSVMELWSIFDFIMPEYL 790 Query: 828 -----FSGR--QSFRQLPA--DRISSIVAPFILRRLKKDVLEELPDRIETVQRTELLLEQ 878 FS R + ++ PA + ++ ++ PFILRR KK+V++ELP++IE + ++ +Q Sbjct: 791 YDEDRFSVRYYKKLKEEPAVIEDLNRLIKPFILRRKKKEVVKELPNKIEKIVAVDMESKQ 850 Query: 879 KQLYLAYLSKLREDTEQDLQGEGFQKSRMKILAGITRLRQLCCHPSLFVENYTGGSGKLD 938 K++Y Y E+ ++ + F KS+++IL+ ITRLRQ+C PS+ +E+YTGGS K++ Sbjct: 851 KKVYSTYAKYAVSLIEKRVEYDEFNKSKIEILSYITRLRQICLDPSVVMEDYTGGSAKIN 910 Query: 939 QLLELVEGCRASGKRMLVFSQFSSMLQLIRESLTASGIIPFYLDGSTPAGERVELCRRFN 998 L+EL+ G ++LVFSQF+S+L+ I E I YLDGS + R+ + + FN Sbjct: 911 ALIELLNHSIDEGHKILVFSQFTSVLKNIAERFREEKIKYSYLDGSINSKNRMNMVQDFN 970 Query: 999 EGEGEVFLISLKAGGTGLNLTGADTVILYDLWWNPAVEEQAVGRAHRMGQRHVVQVIRMI 1058 EG VFLISLKAGGTGLNLT AD VI +D WWNPAVEEQA RAHR+GQ+++V+VI+++ Sbjct: 971 EGNNSVFLISLKAGGTGLNLTSADVVIHFDPWWNPAVEEQATDRAHRIGQKNIVEVIKLV 1030 Query: 1059 TEGTIEEKILELQQRKKNLIEEIIE---SGENKASRLSEEDIRELLK 1102 +GTIEEKI+ LQ+ KK L++ ++ S S L E +I EL K Sbjct: 1031 AKGTIEEKIIRLQEEKKRLVDSLLSEDLSTSEVFSGLDENEIIELFK 1077 >CAC2996 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 1052 Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust. Identities = 356/1140 (31%), Positives = 552/1140 (48%), Gaps = 128/1140 (11%) Query: 1 MIFITLKEIRETCGDTFYKRGKAYYEAGRVHNLECNEIGNCY--------TAEV-KGS-K 50 M IT IR+ YK Y +V N+ NE N + AEV GS Sbjct: 1 MFNITKDNIRKLMKPKTYKEALDLYNGNKVFNIVVNENHNDFYDANFVKINAEVMDGSGN 60 Query: 51 SYKVRIEFDEEAFIVDSDCACPAFKDYGSCKHEAATLIAISRLGQKDSVK-DKPQHLEQT 109 Y I F+ + I C C K+ C H A LI + K++VK D + L Sbjct: 61 DYTCMILFNNKTGINIIKCNCSNVKNNDICSHVGAVLI--KYIDGKNNVKSDYSKRL--- 115 Query: 110 TSFDLDLMLDSILKKQTAQGKPAAGQAYKPAEQLISSFSESNTGPAHDSSSLFGDAEQLQ 169 L + SI+K++ +GKP E + F+E+ Sbjct: 116 ----LYGLKQSIIKREI-KGKPIN------IEVKLHYFTET------------------- 145 Query: 170 FEFILKTGISHRTAAFSLEMRVGVKRLYVVSKINRFLEHVEQHLPYYFTSHFTFDPKKQQ 229 T + +RVG RLYVV ++ FL+ + ++ FT+ P K Sbjct: 146 ------------TKKSYINIRVGEDRLYVVKDVSTFLKSILENKQIKIGEKFTYYPYKYS 193 Query: 230 INPADLAFLNALILIKNTEKVYRTSXXXXXXXXXXXXXRAIAVPPLGWEKLKPLLSE--V 287 I D L I Y + + I + G +L +L + Sbjct: 194 IKKRDEELFELLFAI------YHDNEDVVKDKEKSILGKNIYLTESGLSRLMIILEDRDF 247 Query: 288 NVVLGSFGQPGTRAELINEAPPFSFSIGKGGPKDYVLSASGIEKCNVFPEYSSMIVEGKI 347 ++++ G +++E P + +I + + L+ SG E ++ + +GK+ Sbjct: 248 SILINDEGITDCYI-VVDEFPKINLTIEEK-EESVKLTLSGGEPISLVRGNKYVFYQGKV 305 Query: 348 YSQDPAALHRIEQLQQTLSASKGLAISSQQIEPFIQRVVPALRELGAVKVDKTVQERIIQ 407 Y D ++ L + S SK + + + + V P L+ELG + ++ Sbjct: 306 YKLDQYKINIYSLLIKVFSNSKVVKYYKEDRQDVLSYVYPVLKELGIAACKNVINYDYLK 365 Query: 408 PELQCKIYLDYTEGKLLTTLEFHYGDIVIDPLSSHQDYAKNGEIILVRNVQ-----KEDE 462 P K+Y+D + +L ++F D + + NGE+ +++ +Q K+ E Sbjct: 366 P----KVYMDKIDENMLINIKFENNDKKLKDV--------NGEVYIIKILQDFGFYKDGE 413 Query: 463 IIGMLDRSSMNREGRQWVSASELGMYEALHEFVPSLEEYADIYLTAAAQNLIMKRQASP- 521 II +++ S M E + + ++ Y ++N+ + SP Sbjct: 414 II--------------YINDSLDKMVEFMSVGLDKIQSKG--YEIYYSENIKKFKVYSPH 457 Query: 522 --KVRADLNEGLDWLHISFEMEGLDEKETTRVMQAIVEKKKYIRLRSGAFLSLQTEGFHE 579 K +NEG + + +SFE++G+D E + +A+ KKKY +L+ G + L + + Sbjct: 458 MYKGSLKVNEG-NMIEVSFEIDGIDNSELYNIFEALRLKKKYYKLKEGEIVDLSNKVIKK 516 Query: 580 FRTMADRLNLGKKDLKAPSIQLPSVHALQLPERRTSTKAMKWGKSLRL--FLDQLKEPEN 637 M ++L + L +A + M + K R + K EN Sbjct: 517 IADMFKYMDLDYSKINQKPAILSKENAAYINRYIDEENLMFFDKDTRFERMVKLSKGLEN 576 Query: 638 MDFELPGQMKDILRDYQVKGFQWMKTLSRFRFGGILADDMGLGKTIQSIAYICSELEENP 697 M +P + I+RDYQ +GF+W K+L F GGILAD+MGLGKT+Q+IA+I S Sbjct: 577 MKVGIPNEFNSIMRDYQKRGFRWFKSLDHFGVGGILADEMGLGKTLQTIAFISSG---TG 633 Query: 698 EKTKILIICPASLTYNWANEFASFAPEVKILVAAGQKEERSELLDGIDNEEAQVIITSYP 757 K +II P S+ YNW E F+ +K L+ +G K ER+E + N + V+ITSY Sbjct: 634 HKETSIIIVPTSIVYNWKEEIEKFSKNLKTLIISGTKRERAEAIGEYYNYD--VLITSYS 691 Query: 758 LLRRDIDLYSGKSFHTLILDEAQAVKNAASQTAQAVKSIKAARKFALTGTPIENSIDELE 817 L+R DI+ YS F ILDEAQ +KN S +AVK I+A FALTGTPIEN + EL Sbjct: 692 LIRMDIEEYSKIKFKYCILDEAQYIKNKNSLITKAVKKIRAKNCFALTGTPIENCLSELW 751 Query: 818 SIIGTVSP---LLFSGRQSFRQLPADR---------ISSIVAPFILRRLKKDVLEELPDR 865 SI + P L +S + + P + ++ + PFILRRLK+ V++ELP + Sbjct: 752 SIFDFIMPGYLLSYSKFVNKYENPIIKEKDKRALYELNRHIEPFILRRLKESVVKELPSK 811 Query: 866 IETVQRTELLLEQKQLYLAYLSKLREDTEQDLQGEGFQKSRMKILAGITRLRQLCCHPSL 925 +E E+ +QK++Y AYL RE + ++ +G S+ I + +TRLRQ+C +P Sbjct: 812 VEHKILIEMSQKQKEVYYAYLKNAREKIYRSIEEKGINNSKFIIFSLLTRLRQICSNPRT 871 Query: 926 FVENYTGGSGKLDQLLELVEGCRASGKRMLVFSQFSSMLQLIRESLTASGIIPFYLDGST 985 VENY G + K+D L++ ++ A+ R+LVFSQF+S+L+ I++ L I YLDG+T Sbjct: 872 VVENYNGKNAKMDVLMDTIKTSIANRHRILVFSQFTSVLKSIKDKLIEKDIDVMYLDGNT 931 Query: 986 PAGERVELCRRFNEGEGEVFLISLKAGGTGLNLTGADTVILYDLWWNPAVEEQAVGRAHR 1045 +R +L FN+G+GEVFLISLKAGGTGLNLTGAD V+ +D WWNPAVE QA RAHR Sbjct: 932 KMKDRFQLADEFNKGKGEVFLISLKAGGTGLNLTGADIVVHFDPWWNPAVENQASDRAHR 991 Query: 1046 MGQRHVVQVIRMITEGTIEEKILELQQRKKNLIEEIIE----SGENKASRLSEEDIRELL 1101 +GQ+ V++I++IT GTIEEKI +LQQ KK +++ ++ S EN L E+ I+ + Sbjct: 992 IGQKKNVEIIKLITRGTIEEKIYKLQQEKKKMVDNVLGDKMFSEENVLLNLDEQKIKNIF 1051 >FN1160 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 1089 Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust. Identities = 240/636 (37%), Positives = 351/636 (55%), Gaps = 32/636 (5%) Query: 480 VSASELGMYEALHEFVPSLEEYADIYLTAAAQNLIMKRQASPKVRADLNEGLDWLHISFE 539 V SE+ + + + +P L YADIYL+ + +N R+ + V + +L + F Sbjct: 473 VKKSEIDKF--IEDIIPLLHTYADIYLSQSIKNFNKTRKINYSVGVKVTSN--FLELDFS 528 Query: 540 MEGLDEKETTRVMQAIVEKKKYIRLRSGAFLSLQTEGFHEFRTMADRLNLGKKDLKAPSI 599 LD+ E V+ KKKY RL+ G + + E N+ DLK +I Sbjct: 529 STDLDKGEIIDVLNQYRAKKKYYRLKKGEIILMDQEQLEFLDDFIKDFNIKDSDLKKGNI 588 Query: 600 QLPSVHALQLPERRTSTKAMKWGKSLRLFLDQLKEPENMDFELPGQMKDILRDYQVKGFQ 659 ++P+ A QL + ++ + +Q E+P + K ILR+YQ+ G + Sbjct: 589 KIPNFRAYQLNVLQNKYMDIEKNQDFNKLFEQ------KVIEIPSKYKKILREYQIVGVE 642 Query: 660 WMKTLSRFRFGGILADDMGLGKTIQSIAYICSELEENPEKTKILIICPASLTYNWANEFA 719 WM L GGILADDMGLGKT+Q I Y LE + LI+ PASL NW NEF Sbjct: 643 WMLKLRAMNLGGILADDMGLGKTLQVITY----LESVKRERACLIVTPASLILNWENEFN 698 Query: 720 SFAPEVKILVAAGQKEERSELLDGIDNEEAQVIITSYPLLRRDIDLYSGKSFHTLILDEA 779 F V L G ++ R LL + NE V+ITSY L+RD+DLY F T+ILDEA Sbjct: 699 KFNSSVLTLSIYGDRKNREVLLSNLKNE---VVITSYDYLKRDMDLYENIDFDTIILDEA 755 Query: 780 QAVKNAASQTAQAVKSIKAARKFALTGTPIENSIDELESIIG-TVSPLLFSGRQSFRQLP 838 Q +KN ++ AQAVK I + K ALTGTP+ENS+ E+ SI ++ LF+ ++ Sbjct: 756 QYIKNHKTKVAQAVKKINSKFKLALTGTPLENSLAEIWSIFDFLMNGYLFNYDYFYKNYE 815 Query: 839 -----------ADRISSIVAPFILRRLKKDVLEELPDRIETVQRTELLLEQKQLYLAYLS 887 +R+ ++V PFILRRLKKDVL+ELP++IE ++ E+K+LY A L Sbjct: 816 KAIVLQTEKRVTERLKNMVEPFILRRLKKDVLKELPEKIEETYYVDMNQEEKKLYQANLI 875 Query: 888 KLREDTEQDLQGEGFQKSRMKILAGITRLRQLCCHPSLFVENYTGGSGKLDQLLELVEGC 947 K+ E Q++ +++++LA +T+LRQ+C P L E+ + S K++ +EL+E Sbjct: 876 KINETLAQNI---DVNTNKIEVLAMLTKLRQICIDPRLLYEDVSSSSSKINACIELIEKS 932 Query: 948 RASGKRMLVFSQFSSMLQLIRESLTASGIIPFYLDGSTPAGERVELCRRFNEGEGEVFLI 1007 + +++L+FS F+++L L+ + I F L G T +R E+ F +FLI Sbjct: 933 IENNQKILLFSSFTTVLDLVAQECDNLSIPYFMLTGETNKVKRKEMVENFQNEAVPLFLI 992 Query: 1008 SLKAGGTGLNLTGADTVILYDLWWNPAVEEQAVGRAHRMGQRHVVQVIRMITEGTIEEKI 1067 SLKAGGTGLNLT A VI D WWN + + QA RAHR+GQ VQV +IT+ TIEEKI Sbjct: 993 SLKAGGTGLNLTKASVVIHLDPWWNISAQNQATDRAHRIGQEDTVQVFNLITKNTIEEKI 1052 Query: 1068 LELQQRKKNLIEEIIESGENKASRLSEEDIRELLKM 1103 L LQ +KK L + +E+ + S L++E + +L K+ Sbjct: 1053 LNLQSKKKELSDIFVENSKGSFSSLTKEQLLDLFKL 1088 >CAC3441 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Length = 949 Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust. Identities = 263/738 (35%), Positives = 408/738 (55%), Gaps = 51/738 (6%) Query: 382 IQRVVPALRELGAVKVDKTVQE---RIIQPELQCKIYLDYTEGKLLTTLEFHYGDIVIDP 438 I + + L ++ D + E + L+ + ++ + K+ + YG+I I+ Sbjct: 242 IDNYIKLVSHLSSISQDINIDEELKKFAATMLKYEFFVYEEKDKIYCDVLLKYGNIKINI 301 Query: 439 LSSHQDYAKNGEIILVRNVQKEDEIIGMLDRSSMNREGRQWV-SASELGMYEALHEFVPS 497 L+ KN ++R+ ++E+++I ++R+S + G +++ + + + L S Sbjct: 302 LNK-----KNS---VLRDYKEEEKLIMKIERNSFVKHGNRFMFTGKDKELLNILKRSQDS 353 Query: 498 LEEYADIYLTAAAQNLIMKRQASPKVRADLNEGLDWLHISFEMEGLDEKETTRVMQAIVE 557 + + + ++L + + S ++ D + + S+ + + EKE +A Sbjct: 354 ICSLGKVTMGKELEDLKVYKFES--IKGDFYKRDGYYDFSYSIGNMTEKELEHAFKAYKN 411 Query: 558 KKKYIRLRSGAFLSLQTEGFHEFRTMADRLNLGKKDLKAPSIQLPSVHALQLPE--RRTS 615 KKK+ + + FL + F + L + + + I+L AL L + + Sbjct: 412 KKKFYKTKENNFLDFEDSSIRGFFNTLEALRMSDNE-EYGHIKLEEGKALFLYKTIKDGE 470 Query: 616 TKAMKWGKSLRLFLDQLKEPENMDFELPGQMKDILRDYQVKGFQWMKTLSRFRFGGILAD 675 KA+ ++ D+L N + +P K LR+YQ+KGF+W KTLS FGGILAD Sbjct: 471 FKAVNGYADIKAIEDKLSSINNREIAIPKGFKGKLREYQIKGFKWFKTLSELGFGGILAD 530 Query: 676 DMGLGKTIQSIAYICSELEENPEKTKILIICPASLTYNWANEFASFAPEVKILVAAGQKE 735 +MGLGKTIQ+IA++ SE + K LI+CP SL YNW E FAPE+++L+ G K Sbjct: 531 EMGLGKTIQTIAFLLSE-----KSKKALIVCPTSLIYNWKEEILRFAPELRVLIVHGPKR 585 Query: 736 ERSELLDGIDNEEAQVIITSYPLLRRDIDLYSGKSFHTLILDEAQAVKNAASQTAQAVKS 795 D +E +I+TSY LR DI Y F I+DEAQ +KN +++ +K Sbjct: 586 -------TYDMDEYDIILTSYGTLRMDIHKYKNVIFDYCIIDEAQNIKNPSAKNTIVIKR 638 Query: 796 IKAARKFALTGTPIENSIDELESIIGTVSPLLFSGRQSFRQL----PADRISSI---VAP 848 IKA +FALTGTPIEN++ EL SI + P R+ F + D + S+ +AP Sbjct: 639 IKAYTRFALTGTPIENNLTELWSIFDFLMPGYLYSREKFEEKFVFGEEDNLESLKLLIAP 698 Query: 849 FILRRLKKDVLEELPDRIETVQRTELLLEQKQLYLAYLSKLREDTEQDLQGEGFQKSRMK 908 FILRR KK+V+ ELPD+IE E+ Q+ +Y Y+ ++ + G R++ Sbjct: 699 FILRRTKKEVVAELPDKIEKKFIVEMTSAQRIVYAEYIKSVKAMMKNHKDG------RVQ 752 Query: 909 ILAGITRLRQLCCHPSLFVENYTGGSGKLDQLLELVEGCRASGKRMLVFSQFSSMLQLIR 968 I + +TRLRQ+C PSL +E+Y GGSGKL LE++ G ++L+FSQF+S L I Sbjct: 753 IFSYLTRLRQICLDPSLILEDYNGGSGKLKTALEIIRGHEG---KVLLFSQFTSALYKIE 809 Query: 969 ESLTASGIIPFYLDGSTPAGERVELCRRFNEGEG-EVFLISLKAGGTGLNLTGADTVILY 1027 E L I F+LDGST +R+ + FN +VFLISLKAGGTGLNLT A+ VI + Sbjct: 810 ECLRKEKIKFFHLDGSTKPQDRINMVNDFNSNNAIKVFLISLKAGGTGLNLTSANLVIHF 869 Query: 1028 DLWWNPAVEEQAVGRAHRMGQRHVVQVIRMITEGTIEEKILELQQRKKNLIEEIIESGEN 1087 D WWNPAVE QA RAHR+GQ++VV+VI+++ +GTIEEKI+ LQ+ KK LI+ +I +GE Sbjct: 870 DPWWNPAVENQATDRAHRIGQKNVVEVIKLVAKGTIEEKIILLQEDKKELIDNVI-TGEL 928 Query: 1088 KASR----LSEEDIRELL 1101 + S+ LS+E++ EL Sbjct: 929 QNSKLLGSLSKEELIELF 946 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 77,904,238 Number of extensions: 3280183 Number of successful extensions: 13937 Number of sequences better than 1.0e-05: 48 Number of HSP's gapped: 13750 Number of HSP's successfully gapped: 58 Length of query: 1103 Length of database: 38,378,431 Length adjustment: 117 Effective length of query: 986 Effective length of database: 24,884,353 Effective search space: 24535972058 Effective search space used: 24535972058 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)