BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0545.0027.p
         (242 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3217 [K] COG5662 Predicted transmembrane transcriptional regul...    49   9e-06

>BH3217 [K] COG5662 Predicted transmembrane transcriptional regulator
           (anti-sigma factor)
          Length = 240

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 2/141 (1%)

Query: 101 IMLLGLFGTEQDGRSERNRYVSSYEPQA-MAVLNRPETVAYPLD-WSRKDQFSGNVWYNG 158
           +ML+    +   G       ++ +E Q  +     P T    ++  S +   +G VW N 
Sbjct: 97  LMLVVALASLNKGMDHDAVQIAPFEEQERLNFQQNPHTQQLDIEPLSYQPDLNGYVWVND 156

Query: 159 SSQELFVLIEDVALSDGLSIQAWAVKNGNRNTLGLIQIEDAKGHLYVKGSQLREADNIAL 218
            + E+FV I+ ++       Q W +   N     +I I++     ++ G  +     I  
Sbjct: 157 VTHEIFVEIDGLSELQNQDHQLWIIFTDNNVQGAIIPIQEGSSRFFMHGMDVETLKLIKA 216

Query: 219 TVEPTGGSLSPTSPDAAWVHL 239
           +VEP GGS +PT P+   V +
Sbjct: 217 SVEPKGGSHTPTGPETFIVEI 237


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,441,726
Number of extensions: 442912
Number of successful extensions: 659
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 38,378,431
Length adjustment: 103
Effective length of query: 139
Effective length of database: 26,499,029
Effective search space: 3683365031
Effective search space used: 3683365031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)