BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0054.p
         (132 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA0382 [KR] COG0454 Histone acetyltransferase HPA2 and related ...   106   1e-23

>VCA0382 [KR] COG0454 Histone acetyltransferase HPA2 and related
           acetyltransferases
          Length = 141

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 83/123 (67%), Gaps = 2/123 (1%)

Query: 7   LRQIYLDSRRGSFHWANADEMTLDDFDQDTSEEQILLAEENAQVLGFASLYVPNRFIHNL 66
           LR++YLDSRR SF W  AD   ++DFD+D+  E+I L+E    V+GF S++ P+ FIH+L
Sbjct: 14  LRKLYLDSRRDSFPWLKADSFRIEDFDRDSQGERIWLSEVLGNVVGFISIWEPDNFIHHL 73

Query: 67  FVHPTASGKGVGDLLLKRAVAELGTPVTLKCVSENHKALSFYNKRGWKAVVE-EGEPGAR 125
           +V     G+GVG +LL  A  + G  ++LKC+ +N KAL+FY+ +G++ V + + E G  
Sbjct: 74  YVATEYQGQGVGSMLLNGAKMKYGN-LSLKCMVQNQKALNFYSSQGFEIVSQVDDELGGY 132

Query: 126 YWV 128
           Y++
Sbjct: 133 YYM 135


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,294,670
Number of extensions: 404851
Number of successful extensions: 1127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 38,378,431
Length adjustment: 94
Effective length of query: 38
Effective length of database: 27,537,035
Effective search space: 1046407330
Effective search space used: 1046407330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)