BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0053.p
         (191 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa1887 [K] COG1309 Transcriptional regulator                          98   6e-21
NMA1971 [K] COG1309 Transcriptional regulator                          51   1e-06
NMB1717 [K] COG1309 Transcriptional regulator                          51   1e-06
aq_281 [K] COG1309 Transcriptional regulator                           49   6e-06

>SMa1887 [K] COG1309 Transcriptional regulator
          Length = 200

 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 101/185 (54%), Gaps = 13/185 (7%)

Query: 12  RKHIITSAAKAFRTKGVRNISLPYIMKGAGLTHGGFYSHFENKEQLVIEAFHFAIDDTIE 71
           R+ +I  A++ FR  G   I L  +MKGAGLT GGFY  FE+K+ L  +A   A++  + 
Sbjct: 12  REAVIDVASRLFRKHGFDGIGLKDLMKGAGLTQGGFYKQFESKDDLAAQASRRALESALR 71

Query: 72  LLQKVADKNEDQPQIQSVIEFYLSSVHRDQTEIGCILPTLSGEISQLSEEVRQAYTRELQ 131
                A  N   P   +V+ FYLS  HR++   GC +  L  + ++   +V+ ++   ++
Sbjct: 72  RWSAAAAANPQHP-FGAVVAFYLSMAHREEKMDGCPVVALGSDAARQGVDVKASFEAGIR 130

Query: 132 RFMKFISDMAGVDASTG-------YALVNSMVGTVALARAVSDPKLSDDLLLAGKNQAKR 184
            +++ + +  G  A+ G        A++++MVG V L+RAV+D ++S   L   K  A+ 
Sbjct: 131 EYLEVLGEWIG--AADGEEPDGKAMAILSTMVGAVLLSRAVNDEQMSKRFL---KTAAES 185

Query: 185 IIEAS 189
           +++AS
Sbjct: 186 VLKAS 190


>NMA1971 [K] COG1309 Transcriptional regulator
          Length = 169

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 8/60 (13%), Positives = 18/60 (30%)

Query: 9  LKVRKHIITSAAKAFRTKGVRNISLPYIMKGAGLTHGGFYSHFENKEQLVIEAFHFAIDD 68
          L   +    S  K  +    + + L    K    T        E  E+++ +    +  +
Sbjct: 9  LVELRAEYESGQKILKDIEAKLVELENRKKNLNETLLRISGAIELLEEVLEDQGKVSTPE 68


>NMB1717 [K] COG1309 Transcriptional regulator
          Length = 210

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 9  LKVRKHIITSAAKAFRTKGVRNISLPYIMKGAGLTHGGFYSHFENKEQLVIEAFHFAIDD 68
          LK ++H++ +A + F  KG+   SL  I + AG+T G  Y HF+NKE L    F    DD
Sbjct: 9  LKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRGALYWHFKNKEDLFDALFQRICDD 68


>aq_281 [K] COG1309 Transcriptional regulator
          Length = 179

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 13/137 (9%)

Query: 9   LKVRKHIITSAAKAFRTKGVRNISLPYIMKGAGLTHGGFYSHFENKEQLVIEAFHFAIDD 68
           ++ R+ II +AAK F  KG  N  + +I++ AG+  G FY +F++KE++  E     ++D
Sbjct: 6   VQTRERIIKAAAKEFAEKGFYNTQISHIVESAGVARGTFYIYFKSKEEVFEEILKKVVED 65

Query: 69  TIELLQKVADKNED-----QPQIQSVIEFYLSSVHRDQTEI----GCILPTLSGEISQLS 119
             E ++ V D + D     +  ++ VI++ L   +R+  +I     C  P  +  I    
Sbjct: 66  LKERIKPV-DISRDPVEQVKENVKRVIDYALE--NRELAKIILFRSC-EPNYAKIIDCFF 121

Query: 120 EEVRQAYTRELQRFMKF 136
           E+V    +R L++ +K 
Sbjct: 122 EDVVNLISRSLEKGIKL 138


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.134    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,067,586
Number of extensions: 485627
Number of successful extensions: 1099
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1105
Number of HSP's successfully gapped: 5
Length of query: 191
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 91
Effective length of database: 26,845,031
Effective search space: 2442897821
Effective search space used: 2442897821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)