BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0041.p
         (96 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll2818 [K] COG1733 Predicted transcriptional regulators               64   6e-11
CC1836 [K] COG1733 Predicted transcriptional regulators                61   3e-10
SMc01493 [K] COG1733 Predicted transcriptional regulators              60   6e-10
RSp0843 [K] COG1733 Predicted transcriptional regulators               60   1e-09
AGc3635 [K] COG1733 Predicted transcriptional regulators               59   2e-09

>mll2818 [K] COG1733 Predicted transcriptional regulators
          Length = 132

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 44/59 (74%)

Query: 28 CGYSKVLDIISNKWSALVIYTMEDGKIRYGEMLRRVEGISKKMLTQTVRKLERDGVVQR 86
          C    VL+++++KW  LV+  +  G++R GE+ R++EGI+ KML QT+R LERDG+V+R
Sbjct: 18 CPSHTVLEMLASKWVYLVVCALRKGRLRNGELARKLEGITPKMLAQTLRVLERDGLVRR 76


>CC1836 [K] COG1733 Predicted transcriptional regulators
          Length = 110

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 42/54 (77%)

Query: 33 VLDIISNKWSALVIYTMEDGKIRYGEMLRRVEGISKKMLTQTVRKLERDGVVQR 86
          +LD+I  KW+ L++  ++ G +R G ++R++ GIS+KMLTQT+R LE++G V+R
Sbjct: 1  MLDLIGGKWAILILCCLQQGPVRTGSLMRQIGGISQKMLTQTLRDLEQNGFVER 54


>SMc01493 [K] COG1733 Predicted transcriptional regulators
          Length = 156

 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 42/59 (71%)

Query: 28 CGYSKVLDIISNKWSALVIYTMEDGKIRYGEMLRRVEGISKKMLTQTVRKLERDGVVQR 86
          C    V+D I  KW++L+I ++ DG +R+ ++ R +  IS++MLTQT+R L+RDG ++R
Sbjct: 26 CPVRDVMDNIGGKWNSLMILSLADGPLRFSQLRRLIPDISQRMLTQTLRDLQRDGYLRR 84


>RSp0843 [K] COG1733 Predicted transcriptional regulators
          Length = 137

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query: 32 KVLDIISNKWSALVIYTMEDGKIRYGEMLRRVEGISKKMLTQTVRKLERDGVVQR 86
          ++L  I +KW+ +VI T+ DG +R+  +LR + GIS +MLT T+R LE+DG+V+R
Sbjct: 30 EILSRIGDKWTVMVIGTLADGPMRFNAILRAISGISHRMLTLTLRGLEQDGLVKR 84


>AGc3635 [K] COG1733 Predicted transcriptional regulators
          Length = 289

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 2/59 (3%), Positives = 8/59 (13%)

Query: 28 CGYSKVLDIISNKWSALVIYTMEDGKIRYGEMLRRVEGISKKMLTQTVRKLERDGVVQR 86
            +       + + S                        +        R  +    +  
Sbjct: 36 KKFGIAGSYTAVEVSPDDFPKFIATLKEGKPGAAVGGNATIPHKEAAYRLADHPDALAE 94


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,593,527
Number of extensions: 117670
Number of successful extensions: 530
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 32
Length of query: 96
Length of database: 38,378,431
Length adjustment: 65
Effective length of query: 31
Effective length of database: 30,881,721
Effective search space: 957333351
Effective search space used: 957333351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)