BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0033.p
         (223 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0884 [T] COG0664 cAMP-binding proteins - catabolite gene acti...    89   4e-18
FN1901 [T] COG0664 cAMP-binding proteins - catabolite gene activ...    64   2e-10

>CAC0884 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases
          Length = 229

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 4/207 (1%)

Query: 12  LFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSAQSTKLSVKGKQI 71
           LFS I   +I  +   ++ + KEY KDE +  EGD  + +GI+L G  +  K+   GK +
Sbjct: 14  LFSKIETQEIDHLFSSINYSIKEYYKDETIAIEGDTCNKIGIVLSGCVEIQKIYESGKSL 73

Query: 72  IVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCTKLCMAHEQLLGN 131
            ++              S     P ++ A     I+FIP  SI    +KLC  +   L  
Sbjct: 74  TITTLEESKIFGEAIIFSNKTSYPSTIIACTKSTIIFIPKASI----SKLCSDNSLFLNG 129

Query: 132 LFDSIAERALELHDRNDCLIMPTIRDKVLTYLTRVMRETGTETFTIPFDREAMAEYLDVD 191
               ++ + L L+ +   +   TIR+K+  Y+          TF +   ++ ++E L + 
Sbjct: 130 FMSLLSNKILMLNKKLKNMSYHTIREKISNYILEQYEAQNNLTFKMNKSKKQLSEMLGIP 189

Query: 192 RSALSRELAWMKRDGLIDFYRNEFKLL 218
           R +LSRE   ++ +G+IDF R    +L
Sbjct: 190 RPSLSREFINLREEGIIDFDRTSITIL 216


>FN1901 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases
          Length = 217

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 104/217 (47%), Gaps = 10/217 (4%)

Query: 4   LDSLCQSRLFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSAQSTK 63
           + +L ++ +F+ I    I  +L+      K+Y+ +E +   GD V  + IIL+G+  +  
Sbjct: 2   IKTLKETVVFNSIDEKTIKNILEKTKYEIKKYSPNESIAFRGDEVKGLYIILKGTLITEM 61

Query: 64  LSVKGKQIIVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCTKLCM 123
           L+ +G  I +    P    A      +    P+ +   +  EILF+  K  L    KL  
Sbjct: 62  LTEEGNVIKIEELVPSDVIASAFIFGKKNSFPVDLSVKDEAEILFVERKEFL----KLLF 117

Query: 124 AHEQLLGNLFDSIAERALELHDR-NDCLIMPTIRDKVLTYLTRVMRETGTETFTIPFDRE 182
           + E++L N  + I+ +   L ++  +     TI+ K   Y   V +      F+I  +  
Sbjct: 118 SEEKILENFLNEISNKTQLLTNKIWNSFNNKTIKKKFCDY---VKKNQKNNLFSIQ-NLG 173

Query: 183 AMAEYLDVDRSALSRELAWMKRDGLID-FYRNEFKLL 218
           A+AE+  V+R +LSR L+ + +D  ++   RN++K+L
Sbjct: 174 ALAEFFGVERPSLSRVLSELVKDEKLERIGRNKYKIL 210


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,937,037
Number of extensions: 522310
Number of successful extensions: 1688
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1694
Number of HSP's successfully gapped: 3
Length of query: 223
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 121
Effective length of database: 26,614,363
Effective search space: 3220337923
Effective search space used: 3220337923
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)