BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0029.p
         (189 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MTH1787 [K] COG1309 Transcriptional regulator                          50   3e-06
CC0732 [K] COG1309 Transcriptional regulator                           49   5e-06
lin0926 [K] COG1309 Transcriptional regulator                          49   6e-06

>MTH1787 [K] COG1309 Transcriptional regulator
          Length = 268

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 5/64 (7%), Positives = 12/64 (18%)

Query: 2  IKLKSKEKLQAAATKLFMEKGYENTTVQEIASLAGVTERTFFRQFKDKSDVLFDTNNELG 61
          I      +      K +                  +       + +   D+L   +    
Sbjct: 10 IPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDTPQY 69

Query: 62 QRVA 65
           R  
Sbjct: 70 LRRK 73


>CC0732 [K] COG1309 Transcriptional regulator
          Length = 215

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 36/53 (67%)

Query: 1  MIKLKSKEKLQAAATKLFMEKGYENTTVQEIASLAGVTERTFFRQFKDKSDVL 53
          + K +++E++ AAA +LF E+GYE  T+++IA  AG++    F  F DKS++ 
Sbjct: 23 LAKQRTRERVLAAARRLFSERGYEGATIRDIAQAAGMSTGAVFASFADKSELF 75


>lin0926 [K] COG1309 Transcriptional regulator
          Length = 218

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 7  KEKLQAAATKLFMEKGYENTTVQEIASLAGVTERTFFRQFKDKSDVL 53
          + ++ AA+ +LF EKGY  T+  EIA  AGV E T FR +K K D+L
Sbjct: 25 QRRIVAASIELFAEKGYAGTSTNEIAKKAGVAEGTIFRHYKTKKDLL 71


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.131    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,216,901
Number of extensions: 403041
Number of successful extensions: 2706
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2710
Number of HSP's successfully gapped: 7
Length of query: 189
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 89
Effective length of database: 26,845,031
Effective search space: 2389207759
Effective search space used: 2389207759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)