BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0020.p
         (288 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3679 [T] COG4753 Response regulator containing CheY-like recei...    75   1e-13
BS_ydeC [K] COG2207 AraC-type DNA-binding domain-containing prot...    70   3e-12
BH2109 [T] COG4753 Response regulator containing CheY-like recei...    69   7e-12
CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing prot...    65   2e-10
SPy1587 [T] COG4753 Response regulator containing CheY-like rece...    64   3e-10

>BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 257

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 57/111 (51%)

Query: 166 ELNRTREHSPVDAVLDYIHTNYPQKISLEDLTKCGHLNRVTLNKRFQERCGKTAMGYLLS 225
           E  R      +   L YI  +  QKI L+D+ K  HLN   L+  F+E+   T   YL  
Sbjct: 146 EKERLSSSDSIHEALHYIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLTR 205

Query: 226 HRLKVAGELLVHTDMSLNEVARATGFEYDTYFIKQFTARRGMSPTTYRTAS 276
            RL+ A  LLV TD  ++++A   G++   YFIK F    GM+PT YR  +
Sbjct: 206 KRLQHAKHLLVSTDRPISDIAEKCGYQTAKYFIKIFKEHEGMTPTQYRKGT 256


>BS_ydeC [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 291

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 58/95 (61%)

Query: 179 VLDYIHTNYPQKISLEDLTKCGHLNRVTLNKRFQERCGKTAMGYLLSHRLKVAGELLVHT 238
           +L++IH +Y +KI+LED+ K G L+R    + F+    KT + Y++ +R++ +  LL H 
Sbjct: 193 MLNWIHLHYVEKITLEDIAKAGQLSRSECCRYFKRMLNKTPLRYVMDYRIQKSLLLLQHP 252

Query: 239 DMSLNEVARATGFEYDTYFIKQFTARRGMSPTTYR 273
           + ++ EV+   GF   +YFI +F     M+P +Y+
Sbjct: 253 ESNVTEVSYQVGFNSTSYFISKFQQAMNMTPLSYK 287


>BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 525

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%)

Query: 155 KYLIQILGLLEELNRTREHSPVDAVLDYIHTNYPQKISLEDLTKCGHLNRVTLNKRFQER 214
           K++++   +++EL +    S +  V  YI  +Y + ISL+ +    ++N V + + F++ 
Sbjct: 402 KFVLEAAVIIQELRKENMKSDIYKVKTYIENHYHENISLKSIASLFYMNPVYMGQLFKKT 461

Query: 215 CGKTAMGYLLSHRLKVAGELLVHTDMSLNEVARATGFEYDTYFIKQFTARRGMSPTTYRT 274
            G     YLL  R+  A +LL  TDM + EVA   GF    YF+ QF     M+PT YR 
Sbjct: 462 FGVYFKEYLLKLRMNEAKKLLRQTDMRVYEVAERVGFGSTDYFVTQFEKINKMTPTEYRN 521


>CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 295

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 66/135 (48%)

Query: 139 MEVKAQSDELWVCRIKKYLIQILGLLEELNRTREHSPVDAVLDYIHTNYPQKISLEDLTK 198
           + VKA   +L V  ++ Y+ +IL   E   R R  +    V   I   Y +K++L +L  
Sbjct: 150 LAVKANIYQLIVYLLRGYVDKILNENEFEERKRILNKFQCVFRLIEEKYTEKLTLNELAD 209

Query: 199 CGHLNRVTLNKRFQERCGKTAMGYLLSHRLKVAGELLVHTDMSLNEVARATGFEYDTYFI 258
           C + +     + F++  GKT   Y+   RL  +   L  TD+++ E+A   GF+ + YF 
Sbjct: 210 CVNFSTHHFCRTFKQMTGKTTTDYINGIRLYKSTNYLKQTDLNITEIAIKCGFDNNNYFS 269

Query: 259 KQFTARRGMSPTTYR 273
           + F     M+PT YR
Sbjct: 270 RLFKKHYDMTPTKYR 284


>SPy1587 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 494

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 56/98 (57%)

Query: 176 VDAVLDYIHTNYPQKISLEDLTKCGHLNRVTLNKRFQERCGKTAMGYLLSHRLKVAGELL 235
           V   +D I   Y Q+++L+ +    H+N V L + F+    ++   YL   R++ A +LL
Sbjct: 383 VSETIDCIRKEYHQELTLKAIADRLHVNGVYLGQCFKNETERSFTQYLNHVRIQKAQQLL 442

Query: 236 VHTDMSLNEVARATGFEYDTYFIKQFTARRGMSPTTYR 273
           ++T+ S+NE+A  TG+  + YFIK F    G+SP  +R
Sbjct: 443 LYTNQSINEIAYETGYNTNHYFIKMFKKLNGLSPKEFR 480


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,148,824
Number of extensions: 714519
Number of successful extensions: 1134
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 1139
Number of HSP's successfully gapped: 38
Length of query: 288
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 183
Effective length of database: 26,268,361
Effective search space: 4807110063
Effective search space used: 4807110063
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)