BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0014.p
         (63 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_treR [K] COG2188 Transcriptional regulators                         89   2e-18
BH0873 [K] COG2188 Transcriptional regulators                          77   7e-15
lin1221 [K] COG2188 Transcriptional regulators                         75   2e-14
SPy2099 [K] COG2188 Transcriptional regulators                         64   6e-11
L0150 [K] COG2188 Transcriptional regulators                           55   4e-08

>BS_treR [K] COG2188 Transcriptional regulators
          Length = 315

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 2/57 (3%), Positives = 7/57 (12%)

Query: 1   VEEVTSEDRQLLDLHDYQHIVVVRNYVHLVDTQLFQYTESRHRLDKFQFVDFARRAQ 57
               +           Y           +         +    + K    +      
Sbjct: 182 GVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLC 238


>BH0873 [K] COG2188 Transcriptional regulators
          Length = 237

 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 44/55 (80%)

Query: 1   VEEVTSEDRQLLDLHDYQHIVVVRNYVHLVDTQLFQYTESRHRLDKFQFVDFARR 55
           V E T ED+Q LDL +Y  +VVVRNYV+L +  LF+YTESRHR DKF+FVDFARR
Sbjct: 181 VTEATEEDKQYLDLQNYDLVVVVRNYVYLDNAVLFEYTESRHRPDKFRFVDFARR 235


>lin1221 [K] COG2188 Transcriptional regulators
          Length = 237

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query: 1   VEEVTSEDRQLLDLHDYQHIVVVRNYVHLVDTQLFQYTESRHRLDKFQFVDFARR 55
           VE + +ED++ L LH   H+VVV++ V L DT LFQYTESRHRLDKF+F+DFARR
Sbjct: 182 VEPLNAEDKKYLALHGDTHVVVVKSTVFLKDTTLFQYTESRHRLDKFRFIDFARR 236


>SPy2099 [K] COG2188 Transcriptional regulators
          Length = 237

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 43/55 (78%)

Query: 1   VEEVTSEDRQLLDLHDYQHIVVVRNYVHLVDTQLFQYTESRHRLDKFQFVDFARR 55
           ++++T  D+ LLDL   QH+V V++ V+L +   FQ+TESRH+L+KF+F+DFARR
Sbjct: 180 IDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARR 234


>L0150 [K] COG2188 Transcriptional regulators
          Length = 238

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 40/52 (76%), Gaps = 1/52 (1%)

Query: 7   EDRQLLDLHDY-QHIVVVRNYVHLVDTQLFQYTESRHRLDKFQFVDFARRAQ 57
           +D + LDL+    H+V V+++V+L D  LFQYTESRH++D+F+F +FARR +
Sbjct: 186 DDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQK 237


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,504,014
Number of extensions: 131221
Number of successful extensions: 259
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 6
Length of query: 63
Length of database: 38,378,431
Length adjustment: 35
Effective length of query: 28
Effective length of database: 34,341,741
Effective search space: 961568748
Effective search space used: 961568748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)